Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2823 ATGACCATGGCTACATCTGTCAGTTCCCACCGGTCCATCTTCCTCATCCTGTGGATCGTAATCCTGTGCGGTCACGCTCATGCTCGCTTCTTCTCCCGTGATCCGCTTTCTGATGGCGTCTCCGCCAACACCTGGGAAGGCCTCCTCCGCCTCCCGTCGGCGATCACGGCCGAGTCCTCCTGCGAGCAGACCTACGGCTTCCTGCCGTGCACCACCACCGTCATCGGTAACCTGTTCCTCATCCTCGTGTATGGCTTCCTCATGTTCAAGGCTGCTACGTTCCTATCTGGCGGAAGCGAGCTCCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTTCTCCCCATCCTCGGTGCACTTCCCGATGCCATGCTCATCCTCGTGTCTGGGCTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGTTCCACTGTGCTGCTTCTTACTATAATATGGGGGACCTGTGTTATTGTTGGCAAGTGTGACATCGAGAATTCAATTGCTATTGATTCACGAGACACAAGAGGATTTCATTTAACTGGTTCTGGTGTTAGTACTGATATCTGGACAAGTTATGCAGCACGGATTATGGTTATATCTGTCCTTCCATTTGTGATCGTTCAATTACCACAAATTCTTAATTCAACATCCGGAAGGCACTTGGCTGTTTTGATAGCCCTCATTGTGTCACTCTGTTTATTGGTTGCATATTGTCTTTACCAGATTTTCCAGCCCTGGATACAAAAGAGGAAACTTGAATATATTAAACACAAGCATGTTATACTAGGATTTTTGAGACATTTGAAGGAACGTGCGTTGGGAAGGCTGCTGAAAGATAATGGAGAACCTGATAAAGAAGTCATTGAAAAATTGTTTTCAACCATTGATGAAGATCAAGATGGCAGTCTTACTCATAGTGAATTGAGAGCACTGGTTATTGGAATTCAGTTTGAGGAGATTGACCTGGATCATGATGATGCCGTAAAAAGGATCATGAATGATTTTGATACTTCTGGCAACCAACTAGTTGATCGAGGAGAATTTGTTAATGGTGTCAGTAGATGGCTTCAAAGAGCCCAGCGTGCTCCAGTTGCATCTGGTGATGCTGGTCCACACACAAAGAAGTTTTTAAGTGATTTTCACACAGAAACAAAAAGGGAACATGATTTGCTGGATGTGGGAGATCAGAGTAACGAAGAAGCAGAGGGCATTGAGAATGCTAAATGGACATCCATCAAAGCAGTTCTGCTTCTGCTACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTTGTTGATGCTGTGGATAACTTTTCTGAGGCTACCAGTATTCCTGCTTTCTTCATTTCCTTCATTGCTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCGGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACTGCTTCATTAACTTTTTCTGAGCTATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTCTTGGCCTTGGTTTATGTGAGGGGATTGACGTGGGACTTCTCTTCGGAAGTGTTGGTCATTTTGGTGGTTTGCATTGTGGTGGGTGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATCCTTCTTTACCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1737 0.456 MTMATSVSSHRSIFLILWIVILCGHAHARFFSRDPLSDGVSANTWEGLLRLPSAITAESSCEQTYGFLPCTTTVIGNLFLILVYGFLMFKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIENSIAIDSRDTRGFHLTGSGVSTDIWTSYAARIMVISVLPFVIVQLPQILNSTSGRHLAVLIALIVSLCLLVAYCLYQIFQPWIQKRKLEYIKHKHVILGFLRHLKERALGRLLKDNGEPDKEVIEKLFSTIDEDQDGSLTHSELRALVIGIQFEEIDLDHDDAVKRIMNDFDTSGNQLVDRGEFVNGVSRWLQRAQRAPVASGDAGPHTKKFLSDFHTETKREHDLLDVGDQSNEEAEGIENAKWTSIKAVLLLLLGTIIAAAFADPLVDAVDNFSEATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIVVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2823 578 Pfam Sodium/calcium exchanger protein 425 569 IPR004837 GO:0016021|GO:0055085
Vra5g2823 578 Pfam Sodium/calcium exchanger protein 79 255 IPR004837 GO:0016021|GO:0055085
Vra5g2823 578 ProSitePatterns EF-hand calcium-binding domain. 307 319 IPR018247 -
Vra5g2823 578 PANTHER SODIUM/CALCIUM EXCHANGER NCL 17 575 - -
Vra5g2823 578 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 575 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vra5g2823 578 SMART efh_1 338 366 IPR002048 GO:0005509
Vra5g2823 578 SMART efh_1 298 326 IPR002048 GO:0005509
Vra5g2823 578 SUPERFAMILY EF-hand 293 367 IPR011992 -
Vra5g2823 578 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Vra5g2823 578 ProSiteProfiles EF-hand calcium-binding domain profile. 294 329 IPR002048 GO:0005509
Vra5g2823 578 CDD EFh 299 364 IPR002048 GO:0005509
Vra5g2823 578 Pfam EF-hand domain pair 297 361 IPR002048 GO:0005509
Vra5g2823 578 Gene3D - 251 380 - -
Vra5g2823 578 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2823 Vra-Chr5 35939087 35944622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2823 26 578 EF-hand Containing Proteins AT1G53210 67.018 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2823 - - gmx:100809896 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2823 5 35939087 35944622 Vra5g2823 5 35939087 35944622 ECH