Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2698 ATGTCTATATCAGGGTTTGAAGGGCAATGTAGTAATGATGAGAGTAGAGAGAGGAGGTCTGATGTTGAGAACTCCGAAGATGAGAGGAGGTGGTCGAGAATTGGGACCTTGAAGAAGAAGGCGATTAGTGCTTCTTCCAGATTCACTCATTCTCTTAAGAAAAGAGGGAAAAGGAAAATTGATTACAGGATTCCTCCTGTGTCTATTGAGGATGTAAGAGATGCTGGGGAGGAGACTGCTGTCCATGAATTGCGCCAAAAACTTGTTGAAAGGGGTTCTTTGCCTCCTAGGCATGATGACTACCATACATTGTTAAGGTTTCTTAAAGCCAGGGAGTTTAACATTGAGAAGACAATTCAGATGTGGGAGGAAATGCTTGCGTGGCGAAAGGAATATGGAACTGATACTATCCTTGAGGATTTTGAATTTGGAGAGCTGGAAGAAGTGTTGCAGTACTATCCTCAAGGTTACCATGGGATTGATAGGGAAGGTAGGCCAGTTTACATTGAGAGACTTGGGAAAGCCCATCCAAGTCGCCTAATGCGCATCACTACAATAGAACGATATTTGAAATACCATGTCCAGGAGTTCGAGAGGACTCTGCATGAGAAATTTCCAGCATGTTCCATTGCAGCAAAGAGACGGATTTCTTCGACAACAACAATATTGGATGTACAGGGCCTGGGAATGAAAAATTTCTCACGTACTGCTGCAAATCTCTTGTCTGCTATGGCAAAAATAGATAGCAGTTACTATCCTGAGACATTGCATCAAATGTATATTGTCAATGCTGGTTCTGGGTTTAAGAAGATGCTTTGGCCTGCTGCACAGAAGTTTCTTGATTCCAAAACCGTTGCTAAGATACAGATTGTTGAACCTAAGTCTTTATATAAATTACTGGAAGTCATTGACTCTAGTCAGTTGCCAGAATTTCTGGGTGGTTCTTGTACATGTGCCTCAGAAGGTGGATGTCTTCGGTCTAACAAGGGCCCATGGAGTGATCCTGACATCATGAAGGAACGATGCTGTGATACATCAACAGCTGAATCGGGGTCTGATATGAATGAATACTCCTCTCCCAACAGATACATGAGCTGTCCCTATCCTTATTTAGCCCCAGTTCGTGAAGAAGTTAAAGTACCAGATCTCAATGGCTACTACAGTTGTGATGGCTCTCTAGCAGTGGAGAAAGTGATTGAAAGCGATCATTTTCTCCTTAATCAAGAGCAGCCAGTGCAAACTAATGATGTAGGCAATGTTGCTTGTAGAACAGATTCAGGAGGTACTTCTGGCAGCAGTTGGTTCGGCATTGTTAAGGAAAAAGTAGAGAAAATAAATGTCTTATATGTGGCAAGAGTACTGACATTTTTCACAGAAAAACTAGTTACACTCCTCCGCTATCTAACATTCGAATTTTGGAGAACGGAGAACAATATTCATCCATCAATTACCATGGAACGTAATATTCATAACCATTCAGCAGCTGTTGAAGGAGCTTCTGAAAGAGAATATATTCTCCCGTGTATACAACGTCTTCAGAGACTAGAAAATGTCTTTGAGGAACTTAGCAACAAACCTGATGGTATGCCGCAGGAGAAGGAGAAAATGCTGATGGATTCCATGGATAGGATAAAATCTGTTGAGTTTGACCTTGAAAAGACCAAGAGGGTACTACATGCTACAGTGATGAAGCAGCTTGAGATTGCTGATTTGCTGGAGAACTTGAAGAAAACAAAGTGCCGACAAAGAAGGCTATTCTGTTGA 1764 0.4184 MSISGFEGQCSNDESRERRSDVENSEDERRWSRIGTLKKKAISASSRFTHSLKKRGKRKIDYRIPPVSIEDVRDAGEETAVHELRQKLVERGSLPPRHDDYHTLLRFLKAREFNIEKTIQMWEEMLAWRKEYGTDTILEDFEFGELEEVLQYYPQGYHGIDREGRPVYIERLGKAHPSRLMRITTIERYLKYHVQEFERTLHEKFPACSIAAKRRISSTTTILDVQGLGMKNFSRTAANLLSAMAKIDSSYYPETLHQMYIVNAGSGFKKMLWPAAQKFLDSKTVAKIQIVEPKSLYKLLEVIDSSQLPEFLGGSCTCASEGGCLRSNKGPWSDPDIMKERCCDTSTAESGSDMNEYSSPNRYMSCPYPYLAPVREEVKVPDLNGYYSCDGSLAVEKVIESDHFLLNQEQPVQTNDVGNVACRTDSGGTSGSSWFGIVKEKVEKINVLYVARVLTFFTEKLVTLLRYLTFEFWRTENNIHPSITMERNIHNHSAAVEGASEREYILPCIQRLQRLENVFEELSNKPDGMPQEKEKMLMDSMDRIKSVEFDLEKTKRVLHATVMKQLEIADLLENLKKTKCRQRRLFC* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2698 587 MobiDBLite consensus disorder prediction 11 29 - -
Vra5g2698 587 Pfam CRAL/TRIO domain 151 314 IPR001251 -
Vra5g2698 587 Gene3D - 57 132 - -
Vra5g2698 587 CDD SEC14 146 314 IPR001251 -
Vra5g2698 587 SMART sec14_4 145 317 IPR001251 -
Vra5g2698 587 SUPERFAMILY CRAL/TRIO domain 145 339 IPR036865 -
Vra5g2698 587 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 17 339 - -
Vra5g2698 587 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 339 577 - -
Vra5g2698 587 SUPERFAMILY CRAL/TRIO N-terminal domain 75 141 IPR036273 -
Vra5g2698 587 Pfam CRAL/TRIO, N-terminal domain 98 124 IPR011074 -
Vra5g2698 587 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 339 577 - -
Vra5g2698 587 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 17 339 - -
Vra5g2698 587 Gene3D - 133 346 IPR036865 -
Vra5g2698 587 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 145 320 IPR001251 -
Vra5g2698 587 SMART CRAL_TRIO_N_2 100 125 IPR011074 -
Vra5g2698 587 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2698 Vra-Chr5 33642733 33647879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2698 98 322 Acyl Lipid Metabolism Gene Families AT1G55840 30.472 9.55e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2698 - - gmx:100818938 1057.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2698 5 33642733 33647879 Vra5g2698 5 33642733 33647879 ECH