Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2556 ATGTTCGGAATCCTGGGAGGCAAGGGTCACAAGATAAAAGGGCGTTTGGTGATTATGCGAAAGAATGTGTTAGATATCAACAGTCTGACAAGTGTTAAGGGTGTCGTCGGAACAGGAATCAACATCATCGGTGGTGTAGTTGATACTGTCACTGCTTTTGCTTCTCACATCTCCATTCAGCTCATTAGTGCTACTAAAGCTGATGGACATGGGAATGGAAAGGTTGGAAAGGCTACAAATTTGAGAGGACAAGTATCATTGCCAACGTTGGGAGCGGGAGAAGATGCATATGATGTTGAGTTTGACTGGGATAGTGATTTTGGAATTCCTGGCGCATTTTATATTAAAAACTTTATGCAAGTTGAGTTTTATCTCAAGTCCCTAACTCTCGAAGACATTCCTAACAACTATGGAACCATTCACTTTCTATGTAACTCCTGGGTTTACAATTCCAAAGTCTACAACACTGATCGTATTTTCTTCGCCAACAACACATATGTTACTAGCGAGACACCACCCCTACTTGTGAAATACAGAGAAGAAGAATTGAAGGTTGTAAGAGGCAATGGAACTGGAGAACGAAAGGAATGGGATAGAGTTTATGATTATGATGTCTACAATGACTTGGGCGACCCAGATAAAGGTGAAGCTCATGCTCGTCCTGTTCTTGGAGGTTCTTCTACCTTGCCTTACCCTCGTAGAGGAAGAACCGAAAGAGGCAAAACTAAAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCAAGAGACGAAGCATTTGGTCACTTGAAGTCATCTGATTTTCTCACTTATGGATTGAAATCTGTAGTCCAAGATGTGTTGCCTGTACTGACTGATGCATTTGATGGAAATGTTTTGAGCCTTGAGTTTGATAATTTCGCTGAAGTGCGCAAGCTTTATGAAGGTGGAGTTACGTTGCCTACAAACTTTCTTAGCAAGATCGCTCCTTTACCTGTCATTAAGGAAATTCTTCGAACTGATGGTGAACAGTTTCTTAAGTATCCACCACCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACCGATGAAGAATTTGCAAGGGAAACCATTGCTGGTGTTAATCCTAATGTGATTAAGATTCTTGAGGAGTTTCCACCACGAAGCAAGCTAGATACTCAAGCCTACGGTGATCACACTTCCATTATAACAAAAGAACATTTGGAGCCTAACTTGGGTGGGCTCACTGTTGAGCAGGCAATCCATAGCAAGAAGTTGTTCGTTTTGGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATCAATCTACCACAAAGACTTATGCCACAAGAACCATATTTTTCTTGAAAAGCGGTGGAACTTTGGCACCATTGGCCATCGAGTTAAGCAAGCCGCATCCTCAAGGCGACAACCATGGTCCTGTTAGTGAAGTCTATGTTCCTTCGTACGAGGGTGTCGAAGCTTACATTTGGCTATTGGCAAAGGCTTATGTCGTTGTGAATGACTCATGCTACCATCAACTTATTAGCCACTGGCTAAACACTCATGCAGTGGTTGAACCATTCGTCATAGCAACAAATAGGCAACTGAGTGTGCTTCACCCTGTTTACAAACTCTTGTTTCCCCACTATCGTGACACCATGAACATTAATTCGCTTACTCGGAAGGCCTTGGTCAATGAAAACGGTATTATAGAGAAAACATACTTATGGGGTAGATATGCTTTGGAACTGTCTGTTGTGATATATAAGGATTGGTCTTTCCACGATCAAGCATTACCTAATGATCTCCTCAAGAGAGGAGTTGCAGTTAAGGATCCATCTGCTCCCCACGGTATTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGATGCCATCAAGTCGTGGGTGGCAGAGTATGTCGTATTCTACTACAAGTCAGATGAGGCAATTCAAAAAGACCCTGAACTTCAAGCTTGGTGGAAAGAACTTGTTGAAGTGGGTCACAGTGATTTGAAAGATAAGCCATGGTGGCCAAAGTTGCATACTTCTGAAGAGTTGATTGAAATCTCTACTACCCTGATATGGATAGCTTCAGCTCTTCACGCTGCTGTTAACTTTGGACAATATCCATATGGTGGTTTGATCCTTAACAGGCCAACTATTAGCAGAAGATTCATGCCTGAAAAAGGGTCTGCTGAGTATGTTGCATTGGGTAAGAACCCTGAGAAGGAGTTTTTGAAAACTATTACCGGAAAGCAGGAGACCCTTATTGACCTTACGATTATAAAGATCTTGTCAAGGCACACATCTGATGAGTTCTATCTTGGAGAGAGAGATGGTGGTGACTATTGGACTTCTGATGCTGGGCCATTAGAGGCTTTTAAGAGGTTTGGGAAGAAGCTTGCAGAGATTGAACAGAAGCTTGTACAGAAGAATAACAATGAGTCATTGAGAAACCGCACTGGACCGGCTAAAATGCCTTATACTCTGCTCTATCCTTCAAGTGAGGAAGGCTTGACTTTCAGAGGAATTCCCAACAGTATCTCCATCTAA 2574 0.4215 MFGILGGKGHKIKGRLVIMRKNVLDINSLTSVKGVVGTGINIIGGVVDTVTAFASHISIQLISATKADGHGNGKVGKATNLRGQVSLPTLGAGEDAYDVEFDWDSDFGIPGAFYIKNFMQVEFYLKSLTLEDIPNNYGTIHFLCNSWVYNSKVYNTDRIFFANNTYVTSETPPLLVKYREEELKVVRGNGTGERKEWDRVYDYDVYNDLGDPDKGEAHARPVLGGSSTLPYPRRGRTERGKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLTYGLKSVVQDVLPVLTDAFDGNVLSLEFDNFAEVRKLYEGGVTLPTNFLSKIAPLPVIKEILRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILEEFPPRSKLDTQAYGDHTSIITKEHLEPNLGGLTVEQAIHSKKLFVLDHHDYLIPYLRKINQSTTKTYATRTIFFLKSGGTLAPLAIELSKPHPQGDNHGPVSEVYVPSYEGVEAYIWLLAKAYVVVNDSCYHQLISHWLNTHAVVEPFVIATNRQLSVLHPVYKLLFPHYRDTMNINSLTRKALVNENGIIEKTYLWGRYALELSVVIYKDWSFHDQALPNDLLKRGVAVKDPSAPHGIKLLIEDYPYASDGLEIWDAIKSWVAEYVVFYYKSDEAIQKDPELQAWWKELVEVGHSDLKDKPWWPKLHTSEELIEISTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYVALGKNPEKEFLKTITGKQETLIDLTIIKILSRHTSDEFYLGERDGGDYWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNNESLRNRTGPAKMPYTLLYPSSEEGLTFRGIPNSISI* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2556 857 ProSitePatterns Lipoxygenases iron-binding region signature 1. 512 526 IPR020833 GO:0016702|GO:0046872
Vra5g2556 857 SUPERFAMILY Lipoxigenase 169 857 IPR036226 -
Vra5g2556 857 Gene3D - 490 856 - -
Vra5g2556 857 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 166 IPR036392 GO:0005515
Vra5g2556 857 MobiDBLite consensus disorder prediction 234 253 - -
Vra5g2556 857 ProSiteProfiles PLAT domain profile. 36 162 IPR001024 GO:0005515
Vra5g2556 857 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 857 - -
Vra5g2556 857 PANTHER LIPOXYGENASE 7 857 IPR000907 GO:0016702|GO:0046872
Vra5g2556 857 PRINTS Lipoxygenase signature 494 511 IPR013819 GO:0016702|GO:0046872
Vra5g2556 857 PRINTS Lipoxygenase signature 512 529 IPR013819 GO:0016702|GO:0046872
Vra5g2556 857 PRINTS Lipoxygenase signature 532 552 IPR013819 GO:0016702|GO:0046872
Vra5g2556 857 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 165 857 IPR013819 GO:0016702|GO:0046872
Vra5g2556 857 Gene3D - 267 355 IPR027433 -
Vra5g2556 857 Pfam Lipoxygenase 175 840 IPR013819 GO:0016702|GO:0046872
Vra5g2556 857 CDD PLAT_LH2 10 163 IPR042057 -
Vra5g2556 857 SMART LH2_4 10 163 IPR001024 GO:0005515
Vra5g2556 857 Gene3D PLAT/LH2 domain 2 166 - -
Vra5g2556 857 MobiDBLite consensus disorder prediction 212 253 - -
Vra5g2556 857 Gene3D - 356 489 - -
Vra5g2556 857 Pfam PLAT/LH2 domain 70 161 IPR001024 GO:0005515
Vra5g2556 857 ProSitePatterns Lipoxygenases iron-binding region signature 2. 539 549 IPR020834 GO:0016702|GO:0046872
Vra5g2556 857 Gene3D - 167 266 - -
Vra5g2556 857 PRINTS Plant lipoxygenase signature 132 150 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 158 179 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 197 213 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 230 249 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 297 318 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 342 358 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 381 400 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 447 471 IPR001246 GO:0016491
Vra5g2556 857 PRINTS Plant lipoxygenase signature 769 783 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2556 Vra-Chr5 32333179 32338005 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2556 1 857 Acyl Lipid Metabolism Gene Families AT1G55020 55.682 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2556 K15718 - gmx:100803358 1559.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2556 5 32333179 32338005 Vra9g0282 9 2103907 2108474 PCT