Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2555 ATGTCGTTATTGGGAGGAATTTTCGGAGGAAACACGCAGAAGATAAAGGGTACTGTGGTGCTTATGCGAAAGAATGTGTTGGACATCAACAGCATCCTCAACCCTGCCAGCGTCATCGACAACGTCTTCGATTTCGCCGGCAGTCTCGTCGACGCCGTTACTGCTTTCGCCACCTCCATCTCCATCCAGCTCATCAGTTCCACCAAGGCTGATGGACAAGGGAAAGGAAAAGTTGGAACTGCTACAAAGTTAAGAGGGCAAATATCATTACCAACGTTGGGAGCGAGTGAAGAAGCATACGATGTTAATTTCGAATGGGACAGTGACTTCGGAATTCCAGGCGCGTTTTACATTAAGAACTTCATGCAGAATGAGTTCTACCTCAAATCTCTCACTCTCGAAGACATTCCTAACCACGGAACCATTCACTTTGTCTGCAACTCCTGGGTTTACAATGATACTAAATACAAAACTCCTCGTATTTTCTTTGCCAACAACACGTATCTTCCTGGCGAGACACCAGCCCCACTTGTGAAGTACAGAGAAGATGAATTGAAGGTTGTAAGAGGCGATGGAACTGGAGAACGAAAGGAATGGGATAGAATTTATGACTATGATGTCTACAATGACTTGGGCAACCCAGATAAAGGTGAAGCCTATGCTCGCCCTGTTCTTGGAGGTTCTACCTTGCCTTACCCTCGTAGAGGAAGAACTGGAAGACCCAAAACTACAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCAAGAGACGAAGCGTTTGGTCACTTGAAGTCATCCGATTTTCTCGCTTATGCATTGAAATCGGTATCCCAAGATGTGTTACCAGTCTTGACTGATGCATTCGATGGAAATATTTTGAGTCTTGAGTTTGATAGTTTCGCTGAAGTGCACAAGCTTTATGAAGGTGGAGTTACATTGCCCACAGACTTTCTCAGCAAATACGCTCCCATACCAATTGTCAAGGAACTTTTTCGAAGTGATGGTGAACAGTTTCTCAAGTATCCACCACCTAAAGTAATACAAGTGGATAAGTCTGCATGGATCACTGATGAAGAATTTGCAAGAGAAACCATTGCGGGTGTTAATCCTAATGTCATTAAGATTCTTAAGGAATTCCCACCACGTAGCACGCTAGACACTCAAACCTTTGGAGACCATACCTCTATAATAACGAAAGAGCATTTGGAGCCTCAATTAGGAGGGCTCACTGTTGAGCAGGCTATCGAGAACAATAAGTTGTTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATTCATCTACCACAAAGACTTATGCCACGAGAACCATATTTTTCTTGAAAGAGGATGGAACTCTGACACCATTGGCCATTGAGTTAAGTAAGCCACATGATCAGGGTGACGAATTCGGTCCTATCAATGAAGTCTATGTGCCTGCATACGAGGGAGTGGAAGCTTACATTTGGTTACTGGCAAAGGCTTATGTTATTGTGAATGACTCGTGCTACCATCAAATCATTAGCCATTGGCTAAGCACTCATGCAGTTGTTGAGCCTTTCGTCATAGCAACGAACAGGCAATTGAGTGTGGTTCACCCTGTTTACAAGCTCCTGTTTCCTCACTACCGTGATACCATGAACATCAATTCACTGGCCCGCAAGTCCTTGGTCAACGCAGATGGTATCATAGAGAAAACATTCTTGTGGAGTAGGTACTCTTTGGAAATGTCTGCTATAATTTACAAGAACTGGTCTTTCGTTGATCAAGCACTACCTAATGATCTTGTCAAGAGAGGAGTTGCGGTTAAAGATTCATCTGCTCCCCACGGTGTTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGCAGCCATCAAGTCGTGGGTGGAAGAGTATGTGGCATTCTATTACAAGTCAGATGAGGTACTTCAAAAAGACCCTGAACTTCAAGCTTGGTGGAAAGAACTTGTTCAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGTTACAAACACGTGGAGAGTTGGTTGACGTCTCCACCACCCTCATTTGGATATCTTCAGCCCTTCATGCAGCTGTTAACTTCGGACAATATCCATACGGTGGTTTAATCCTGAACAGGCCAACTATTAGCAGAAGATTCATCCCTCAGAAAGGGTCTGCTGAATATGAGGCATTGGCTAAGAATCCAGAGAAGGAGTTTTTGAGAACTATTACTGGTAAGAAAGAGACCCTGATTGACCTTACAGTTATAGAGATATTGTCAAGGCACGCATCTGATGAGTTCTACCTTGGAGAAAGAGATGGTGGAGACTTTTGGACTTCAGATGCAGGGCCATTGGAGGCGTTTAAGAGGTTCGGAAAGAAACTTGCTGAAATTGAAGAAAAGCTTGTACAAAAAAACAATGACGAGACACTGAGAAACCGCACAGGACCTGCAAAAATGCCTTACACTCTTCTCTTTCCTTCCAGTGAGGAGGGATTGACTTTCAGAGGAATACCAAACAGTATCTCTATCTAA 2577 0.4354 MSLLGGIFGGNTQKIKGTVVLMRKNVLDINSILNPASVIDNVFDFAGSLVDAVTAFATSISIQLISSTKADGQGKGKVGTATKLRGQISLPTLGASEEAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLTLEDIPNHGTIHFVCNSWVYNDTKYKTPRIFFANNTYLPGETPAPLVKYREDELKVVRGDGTGERKEWDRIYDYDVYNDLGNPDKGEAYARPVLGGSTLPYPRRGRTGRPKTTKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYALKSVSQDVLPVLTDAFDGNILSLEFDSFAEVHKLYEGGVTLPTDFLSKYAPIPIVKELFRSDGEQFLKYPPPKVIQVDKSAWITDEEFARETIAGVNPNVIKILKEFPPRSTLDTQTFGDHTSIITKEHLEPQLGGLTVEQAIENNKLFILDHHDYLIPYLRKINSSTTKTYATRTIFFLKEDGTLTPLAIELSKPHDQGDEFGPINEVYVPAYEGVEAYIWLLAKAYVIVNDSCYHQIISHWLSTHAVVEPFVIATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWSRYSLEMSAIIYKNWSFVDQALPNDLVKRGVAVKDSSAPHGVKLLIEDYPYASDGLEIWAAIKSWVEEYVAFYYKSDEVLQKDPELQAWWKELVQVGHGDLKDKPWWPKLQTRGELVDVSTTLIWISSALHAAVNFGQYPYGGLILNRPTISRRFIPQKGSAEYEALAKNPEKEFLRTITGKKETLIDLTVIEILSRHASDEFYLGERDGGDFWTSDAGPLEAFKRFGKKLAEIEEKLVQKNNDETLRNRTGPAKMPYTLLFPSSEEGLTFRGIPNSISI* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2555 858 Gene3D PLAT/LH2 domain 7 168 - -
Vra5g2555 858 Gene3D - 169 267 - -
Vra5g2555 858 Gene3D - 491 857 - -
Vra5g2555 858 Gene3D - 357 490 - -
Vra5g2555 858 ProSiteProfiles PLAT domain profile. 38 164 IPR001024 GO:0005515
Vra5g2555 858 CDD PLAT_LH2 14 165 IPR042057 -
Vra5g2555 858 Gene3D - 268 356 IPR027433 -
Vra5g2555 858 PRINTS Lipoxygenase signature 495 512 IPR013819 GO:0016702|GO:0046872
Vra5g2555 858 PRINTS Lipoxygenase signature 513 530 IPR013819 GO:0016702|GO:0046872
Vra5g2555 858 PRINTS Lipoxygenase signature 533 553 IPR013819 GO:0016702|GO:0046872
Vra5g2555 858 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 11 858 - -
Vra5g2555 858 ProSitePatterns Lipoxygenases iron-binding region signature 1. 513 527 IPR020833 GO:0016702|GO:0046872
Vra5g2555 858 Pfam PLAT/LH2 domain 68 163 IPR001024 GO:0005515
Vra5g2555 858 ProSitePatterns Lipoxygenases iron-binding region signature 2. 540 550 IPR020834 GO:0016702|GO:0046872
Vra5g2555 858 SUPERFAMILY Lipoxigenase 170 858 IPR036226 -
Vra5g2555 858 PANTHER LIPOXYGENASE 11 858 IPR000907 GO:0016702|GO:0046872
Vra5g2555 858 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 168 IPR036392 GO:0005515
Vra5g2555 858 PRINTS Plant lipoxygenase signature 134 152 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 160 181 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 199 215 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 231 250 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 298 319 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 343 359 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 382 401 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 448 472 IPR001246 GO:0016491
Vra5g2555 858 PRINTS Plant lipoxygenase signature 770 784 IPR001246 GO:0016491
Vra5g2555 858 SMART LH2_4 13 165 IPR001024 GO:0005515
Vra5g2555 858 MobiDBLite consensus disorder prediction 222 254 - -
Vra5g2555 858 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 167 858 IPR013819 GO:0016702|GO:0046872
Vra5g2555 858 Pfam Lipoxygenase 177 841 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2555 Vra-Chr5 32326898 32331246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2555 3 858 Acyl Lipid Metabolism Gene Families AT1G55020 57.126 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2555 K15718 - gmx:547860 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2555 5 32326898 32331246 Vra9g0281 9 2085269 2089524 PCT