Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2554 ATGTTTTCTGGTATTTCTGGTCTGATCCAGAAGGGGCACAAGATAAAGGGGACAGTAGTGTTGATGCGAAAGAATGTGTTGGACGTTAACAGCGTAACCAGTGTTGGAGGCATTATTGGTCAAGGACTCGACCTTCTTGGTTCCACTGTCGACAATCTCACTGCCTTCTTGGGTCGATCAGTTTCTCTCCAACTCATCAGTGCCACCAAACCAGATGCCAACGGAAAGGGGAAGCTTGGAAAGGCTACCTTTTTGGAAGGTATCATCACTTCACTGCCAACTTTGGGAGCAGGCCAAGCTGCATTCAAAATTCATTTTGAATGGGACGATGAGATGGGAATTCCTGGAGCATTTTACATCAAGAATTTCATGCANACTGAGTTCTTCCTTGTGAGTTTGACTCTTGAAGACNTTCCAAACCATGGAAGCCTCCACTTTCTTTGCAACTCCTGGATATACAATGCCAAACACTTCAAAAATGATCGCATCTTCTTTGTCAATCAGACATATCTTCCAAGCGAAACACCGGCTCCACTGGTGAAGTATAGAGAAGAAGAGTTAGTTAATTTGAGAGGAGATGGAACAGGAGAACGTAGAGAGTGGGAGAGGGTCTATGACTATGATGTCTACAATGATTTAGGTGATCCAGATAAGGGTGAAAATCATGCACGTCCTATTCTTGGAGGGTCTGACACCTTGCCTTATCCTCGTAGGGGGAGGACTGGTAGAAGACCAACAAGGAAAGATCCAAAAAGTGAGAGTAGGAGCTCTGATATTTATCTTCCAAGAGATGAAGCTTTTGGACACTTGAAGTCATCAGACTTTTTGACTTATGGGCTGAAATCTGTATCTCAAAATTTTCTTCCAGCATTGGAATCTGCTTTTGATTTGAATTTCACACCCAATGAGTTTGATAGCTTTGATGATGTTCATAGACTCCATTCGGGTGGAATTAAGCTGCCAACAGATGTAATTAGCAAGATAAGTCCATTACCCGTGCTCAAGGAAATCTTCAGGACTGATGGTGAACAGGTTCTTAAGTTTCCTCCTCCTAAAGTGATTCAAGTGAGTAGGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACATGATTCGTCTTCTTCAGGATTTCCCTCCACGAAGCAAGCTAGATAGCCAAGTCTACGGTGATCATACCAGTAAAATTACCAAAGAACACCTGGAGCCTAATTTAGAAGGGCTCACTGTAGACGAGGCAATTCAAAACAAGAGATTGTTCATACTTGATCATCACGACTCAATCATGCCATATTTAAGGCGAATAAATGCAACATCCAACAAGGCTTATGCCACCAGAACCATCCTTTTCCTNAAAAACGACAAAACTTTAAGGCCACTTGCCATAGAACTGAGTTTGCCACATCCCGGGAATGATAAATCAGGTGTTGTTAGTCAAGTTTTTCTGCCTGCAGATGAAGGTGTTGAAAGTTCTATCTGGCTTCTAGCAAAGGCCTGTGTAATAGTGAATGACTCCAGCTATCATCAACTGGTCAGCCACTGGTTAAACACACATGCAGTTATTGAGCCATTCGTCATAGCAACAAACAGGCATCTGAGTGTTGTTCATCCTATATATAAACTCCTGCACCCTCACTATCGTGACACCATGAACATAAATGCCCTTGCTCGGGGATCTCTTGTCAATGACGGTGGAATTATAGAGAAAACCTTTTTATGGGGAAGGTATTCTATGGAAATGTCTGCTACGATCTACAAAGATTGGGTCTTTACAGATCAAGCATTGCCAGCTGATCTTATAAAAAGAGGAATAGCAACTGAGGATCCAGAGTGCCCTCATGGTCTTCGTCTCTTCATAGAGGACTACCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTTCATGAATATGTTTTATTGTACTACAAATCAGANGAGACACTGAAAGANGATCCTGAGCTCCAAGCTTGGTGGAAAGAACTGGTAGAGGTGGGTCATGGTGACAAGAAAAACGAACCATGGTGGCCTAAGATGCAGACTCGTGAAGAGCTAGTTGAAGCTTGCAGTATTGTGATATGGACAGCTTCAGCACTGCATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGTTTGATCTTAAACCGTCCAACTATCAGTAGGCGATTGATGCCCGACAAAGGTTCTGCTGAATATGAGGAGCTGAAGAAGAGCCCTCAGAAGGCTCTCTTGAGGACCATTACACCAAAGTTTCAGACCCTTATTGACCTTTTAGTGATAGAAATATTGTCAAGGCATGCTTCTGATGAGATCTATTTGGGTGAAAGGGACAATCCAAATTGGACATCTGATACAAGGGCCTTGGAGGCTTTCAAAAGGTTTGGGAAGAANCTCTCAGAAATTGAGAAGAAACTCTCAGAGAGAAACAATGATGNGAAACTGAGAAACCGCCATGGACCTGTTCAGATGCCTTATACTCTGCTCTTCCCTTCAAGTGATGAAGGCTTAACTTTCAGAGGAATTCCCAACAGTATATCCATCTGA 2583 0.4262 MFSGISGLIQKGHKIKGTVVLMRKNVLDVNSVTSVGGIIGQGLDLLGSTVDNLTAFLGRSVSLQLISATKPDANGKGKLGKATFLEGIITSLPTLGAGQAAFKIHFEWDDEMGIPGAFYIKNFMXTEFFLVSLTLEDXPNHGSLHFLCNSWIYNAKHFKNDRIFFVNQTYLPSETPAPLVKYREEELVNLRGDGTGERREWERVYDYDVYNDLGDPDKGENHARPILGGSDTLPYPRRGRTGRRPTRKDPKSESRSSDIYLPRDEAFGHLKSSDFLTYGLKSVSQNFLPALESAFDLNFTPNEFDSFDDVHRLHSGGIKLPTDVISKISPLPVLKEIFRTDGEQVLKFPPPKVIQVSRSAWMTDEEFAREMLAGVNPNMIRLLQDFPPRSKLDSQVYGDHTSKITKEHLEPNLEGLTVDEAIQNKRLFILDHHDSIMPYLRRINATSNKAYATRTILFLKNDKTLRPLAIELSLPHPGNDKSGVVSQVFLPADEGVESSIWLLAKACVIVNDSSYHQLVSHWLNTHAVIEPFVIATNRHLSVVHPIYKLLHPHYRDTMNINALARGSLVNDGGIIEKTFLWGRYSMEMSATIYKDWVFTDQALPADLIKRGIATEDPECPHGLRLFIEDYPYAVDGLEIWDAIKTWVHEYVLLYYKSXETLKXDPELQAWWKELVEVGHGDKKNEPWWPKMQTREELVEACSIVIWTASALHAAVNFGQYPYGGLILNRPTISRRLMPDKGSAEYEELKKSPQKALLRTITPKFQTLIDLLVIEILSRHASDEIYLGERDNPNWTSDTRALEAFKRFGKXLSEIEKKLSERNNDXKLRNRHGPVQMPYTLLFPSSDEGLTFRGIPNSISI* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2554 860 Pfam Lipoxygenase 179 843 IPR013819 GO:0016702|GO:0046872
Vra5g2554 860 Pfam PLAT/LH2 domain 68 165 IPR001024 GO:0005515
Vra5g2554 860 PANTHER LIPOXYGENASE 5 860 IPR000907 GO:0016702|GO:0046872
Vra5g2554 860 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 5 860 - -
Vra5g2554 860 Gene3D - 360 493 - -
Vra5g2554 860 MobiDBLite consensus disorder prediction 216 258 - -
Vra5g2554 860 PRINTS Lipoxygenase signature 498 515 IPR013819 GO:0016702|GO:0046872
Vra5g2554 860 PRINTS Lipoxygenase signature 516 533 IPR013819 GO:0016702|GO:0046872
Vra5g2554 860 PRINTS Lipoxygenase signature 536 556 IPR013819 GO:0016702|GO:0046872
Vra5g2554 860 ProSitePatterns Lipoxygenases iron-binding region signature 2. 543 553 IPR020834 GO:0016702|GO:0046872
Vra5g2554 860 Gene3D - 271 359 IPR027433 -
Vra5g2554 860 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Vra5g2554 860 ProSiteProfiles PLAT domain profile. 41 166 IPR001024 GO:0005515
Vra5g2554 860 SUPERFAMILY Lipoxigenase 171 860 IPR036226 -
Vra5g2554 860 Gene3D PLAT/LH2 domain 4 170 - -
Vra5g2554 860 Gene3D - 494 859 - -
Vra5g2554 860 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 301 322 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 346 362 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 385 404 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 451 475 IPR001246 GO:0016491
Vra5g2554 860 PRINTS Plant lipoxygenase signature 773 787 IPR001246 GO:0016491
Vra5g2554 860 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 860 IPR013819 GO:0016702|GO:0046872
Vra5g2554 860 Gene3D - 171 270 - -
Vra5g2554 860 CDD PLAT_LH2 13 167 IPR042057 -
Vra5g2554 860 ProSitePatterns Lipoxygenases iron-binding region signature 1. 516 530 IPR020833 GO:0016702|GO:0046872
Vra5g2554 860 SMART LH2_4 13 167 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2554 Vra-Chr5 32321522 32325537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2554 1 860 Acyl Lipid Metabolism Gene Families AT1G55020 60.592 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2554 K15718 - gmx:547869 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0281 9 2085269 2089524 Vra5g2554 5 32321522 32325537 PCT