Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2380 ATGCGCAGTGTAACAGCAACACTTTCAACACAACAACACTGTTTCCACTACCACACGCAAACCACCTTCCTCACTACTACCCTTATCCCAATCCAATCCCTCTCCTTCCGCACTCCCAATCACAACTTCAGACTCCTCTGTTTCTCTTCAAACCCCTCGCCACCACCGCCGCCGCTGGTGGTCGTCGGCTCCGCCAACGCAGACATCTACGTCGAGATCGACCGCCTACCGCGCGAAGGCGAGACTCTCGCGGCGAGGTCCGGCCAGACGCTCGCCGGCGGGAAGGGCGCCAACCAGGCCACGTGCTCCGCCAAGCTCAACTACCCGACTTACTTCGTCGGACAGGTCGGGGATGATGCCTACGGAAGCCTCGTCACTGACGCGCTCCGCAGCGGGGGAGTTCGCCTCGACGGTCTCACGGTAGTTCCGTCGGCGTCCACGGGTCAAGCCGTTGTGATGCTCCAATCCAACGGCCAGAACTCCATCATATACATTGGTGGTGCTAACTTGAGTTGGCACAGATTTCTGCCACGTCAGCATTTGGACCTCGTGGCCCAAGCTGGCATCGTTTTATTGCAGAGGGAGATTCCCGATTTTGTCAACACTCAAGTGGCGCAGGCTGCAAGGAATGCTGGTGTGCCGGTCGTGTTGGACGCTGGAGGAATGGATGGGCCACTTGCGCCGGAATTATTGAACTTTGTTGATATTTTGAGTCCTAATGAAACTGAACTTGGTCGCCTTACGGGAATGCCAACGGAAAGTTTTGAAGAGATTGCACGAGCTGCTTTGAAATGCCATCAATTAGGAGCTAAGAAAGTTCTTGCGAAACTTGGCCACAAAGGATCTGCTCTTTTTGTAGAAGGAGAAAACCCGATTCAGCAGCCTGCCATACTTTCTAAAACAGTCATTGATACAACTGGTGCCGGTGATACTTTTACTTCTGCTTTTGCTGTAGCTTTAGTAGAGGGCAAGTCCTACAGGGAATGCCTAAGGTTTGCCGCTGCTGCAGCTTGTCTTTGTGTTCAAGTGAAGGGAGCTTCTCCCAGCATGCCTGATAGGATATCTGTTATGGATCTTCTCAATTGTCAATGA 1092 0.5293 MRSVTATLSTQQHCFHYHTQTTFLTTTLIPIQSLSFRTPNHNFRLLCFSSNPSPPPPPLVVVGSANADIYVEIDRLPREGETLAARSGQTLAGGKGANQATCSAKLNYPTYFVGQVGDDAYGSLVTDALRSGGVRLDGLTVVPSASTGQAVVMLQSNGQNSIIYIGGANLSWHRFLPRQHLDLVAQAGIVLLQREIPDFVNTQVAQAARNAGVPVVLDAGGMDGPLAPELLNFVDILSPNETELGRLTGMPTESFEEIARAALKCHQLGAKKVLAKLGHKGSALFVEGENPIQQPAILSKTVIDTTGAGDTFTSAFAVALVEGKSYRECLRFAAAAACLCVQVKGASPSMPDRISVMDLLNCQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2380 363 CDD ribokinase 60 352 IPR011877 GO:0004747|GO:0006014
Vra5g2380 363 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 304 317 IPR002173 GO:0016773
Vra5g2380 363 Hamap Ribokinase [rbsK]. 57 358 IPR011877 GO:0004747|GO:0006014
Vra5g2380 363 PRINTS Ribokinase signature 61 82 IPR002139 GO:0016301
Vra5g2380 363 PRINTS Ribokinase signature 88 107 IPR002139 GO:0016301
Vra5g2380 363 PRINTS Ribokinase signature 160 173 IPR002139 GO:0016301
Vra5g2380 363 PRINTS Ribokinase signature 229 244 IPR002139 GO:0016301
Vra5g2380 363 PRINTS Ribokinase signature 273 284 IPR002139 GO:0016301
Vra5g2380 363 Gene3D - 56 362 IPR029056 -
Vra5g2380 363 PANTHER SUGAR KINASE 57 361 - -
Vra5g2380 363 SUPERFAMILY Ribokinase-like 58 359 IPR029056 -
Vra5g2380 363 Pfam pfkB family carbohydrate kinase 59 352 IPR011611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2380 Vra-Chr5 30888769 30892716 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2380 K00852 - gmx:102666284 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2380 5 30888769 30892716 Vra5g2380 5 30888769 30892716 ECH