Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2371 ATGGGAAATGTGCCTCTCATCCTTTTCCTTCTGTTCCTGTCTCTCTCACCAGGAGGGAATCTGATCATGGGTAATGAGCAGAAAACCTGGTGTGTGGCAAAGCCTTCATCAGATCAGGCTACCCTTTTGTCCAACCTCAATTTTGCCTGTTCTCAAGTTGATTGCAGGATTCTGCAGAAAGGCTGCCCCTGCTTTTACCCTGACAATCTCATGAACCATGCTTCCATAGCCATGAATCTCTATTACCAATCTAAGGGAAGAAACCACTGGAATTGTGATTTCAGGGCCTCTGCCCTCGTCTCTTTCACTGATCCAAGTTATGGAAACTGCATTTACGCATAG 342 0.4591 MGNVPLILFLLFLSLSPGGNLIMGNEQKTWCVAKPSSDQATLLSNLNFACSQVDCRILQKGCPCFYPDNLMNHASIAMNLYYQSKGRNHWNCDFRASALVSFTDPSYGNCIYA* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2371 113 Gene3D - 23 111 - -
Vra5g2371 113 SMART X8_cls 29 112 IPR012946 -
Vra5g2371 113 Pfam X8 domain 29 98 IPR012946 -
Vra5g2371 113 PANTHER MAJOR POLLEN ALLERGEN OLE E 10-LIKE 6 113 - -
Vra5g2371 113 PANTHER BETA-1,3 GLUCANASE 6 113 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2371 Vra-Chr5 30754160 30755470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2371 30 112 Glycoside Hydrolase AT4G34480 40.476 1.24e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2371 - - gmx:100784427 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2371 5 30754160 30755470 Vra5g2371 5 30754160 30755470 ECH