Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2370 ATGATGTCTGTCACAGGAAAAACCATTGATTTTGCTGGGAAAAACTTGGTCTCTTGTGGCTGCTCTTCCAATGCTTCTTTTGATAGGTACACAGTCAGGAACCCCTCCAGGGTTAGTTCTAAAGGGTGTGGCAAAGGCCATGGAGCATGTAAATTGTTCTGTTGTACTAAGAGGAACACTCAGTGTCGGGTTTCTTCTATGAAGACTGCGGAACCTACCTTGAATGGGGGGACTCAAGCAATTGAAGGCCTTAACAAAGGATTGAACTTGAAGGGTTATTCAGAAGCCCCAATTTCTGCATCTGGGTTCTTTGAAGCTGTTGCTGATGATTTGCTAACTCTCAATAAAAATCTGCAGTCGATTGTAGGAGCAGAAAATCCAGTTTTAATGTCTGCAGCTGAGCAGATTTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTTTGGTGTTCTTGGTGGCAAGGGCAACTGCAGAGCTGCTTGGCTTAAAGGAACTTACTGTAAAGCATCGACGTTTAGCGGAGATAATTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTACTAGATGAGAGTGACCTTCGCAGAGGGAAGAAAACTATGCATCAGATTTTTGGAACAAGAGTTGCAGTGCTGGCTGGAGACTTCATGTTTGCACAGTCATCATGGTATCTAGCCAACCTTGAAAATATTGAAGTCATTAAACTAATCAGCCAGGTGATCAAAGATTTTGCAAGTGGGGAAATAAAGCAGGCCTCAAGTTTGTTTGATTGTGATGTTCAACTTGAAGAGTATCTCATTAAGAGCTATTACAAGACAGCATCCTTGATTGCAGCCAGCACCAAGGGAGCTGCGATCTTCAGCGGTGCTGACAGCGGCATCACTGAGAAAATGTATGAATATGGAAGGAATCTGGGTCTATCCTTCCAAATTGTGGATGACATTTTGGATTTCACGCAATCAGCAGAGCAACTGGGAAAGCCTTCTGGCAGTGACCTTGCTAAGGGTAACCTTACTGCACCAGTAATATTTGCACTGGAGAAAGAACCAAAATTGAGGGATATCATTGAGTCTGAATTCAGTGAGGGTGGTTCCCTTGATGAGGCCATCAATATGGTTAAGAGTTGTGGGAGCATTGAAAGGGCTCAAGAGTTGGCCAGAGAGAAAGCTGATCTTGCAATTCAAAGTCTGCAGTGCCTTCCTCAGAGTGTGTATCGTTTAGCCCTTGAGGATATGGTGGCATATAACCTTCAGCGGATTGCATAA 1269 0.4366 MMSVTGKTIDFAGKNLVSCGCSSNASFDRYTVRNPSRVSSKGCGKGHGACKLFCCTKRNTQCRVSSMKTAEPTLNGGTQAIEGLNKGLNLKGYSEAPISASGFFEAVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVARATAELLGLKELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKKTMHQIFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLEEYLIKSYYKTASLIAASTKGAAIFSGADSGITEKMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPSGSDLAKGNLTAPVIFALEKEPKLRDIIESEFSEGGSLDEAINMVKSCGSIERAQELAREKADLAIQSLQCLPQSVYRLALEDMVAYNLQRIA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2370 422 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 98 421 - -
Vra5g2370 422 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 4 421 - -
Vra5g2370 422 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4 421 - -
Vra5g2370 422 Gene3D Farnesyl Diphosphate Synthase 99 421 IPR008949 -
Vra5g2370 422 CDD Trans_IPPS_HT 124 420 IPR000092 GO:0008299
Vra5g2370 422 SFLD Isoprenoid Synthase Type I 132 416 - -
Vra5g2370 422 ProSitePatterns Polyprenyl synthases signature 1. 184 198 IPR033749 -
Vra5g2370 422 Pfam Polyprenyl synthetase 128 373 IPR000092 GO:0008299
Vra5g2370 422 SUPERFAMILY Terpenoid synthases 102 420 IPR008949 -
Vra5g2370 422 ProSitePatterns Polyprenyl synthases signature 2. 306 318 IPR033749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2370 Vra-Chr5 30744300 30748217 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2370 K05356 - gmx:100783538 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2370 5 30744300 30748217 Vra5g2370 5 30744300 30748217 ECH