Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1896 ATGGATACCGGCAGCAATTCTTTACCATCTGCACCTGATGGGGTTAAGAGAAAGGTTTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTACGGGCAAGGTCACCCTATGAAGCCACATCGTATACGGATGACACATGCTCTTCTTGCTCATTATGGATTGCTTCAGCACATGCAGGTCCATAAGCCATTTCCTGCTAGAGACCGGGACCTTTGTCGTTTTCATGCCGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGACCATCTTAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCAGGGGGGTCGGTTGGGGGTGCAGTGAAGTTAAATCATGACCAATGTGATATCGCTGTCAATTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAACAGCATGAGCGTGTTCTATATGTGGACATTGATATCCACCATGGAGACGGTGTGGAGGAAGCATTCTATACTACAGATAGAGTCATGACTGTTTCTTTTCATAAATTCGGAGACTATTTTCCTGGTACTGGGGATGTACGCGATATTGGATATGGAAAGGGAAAATACTATTCTCTTAATGTTCCACTTGATGATGGTATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTTCAGTGTGGTGCTGATTCTCTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGACATGCAGAGTGTGTTAAATACATGAGATCATTCAACGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGCTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAACACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTCAATCAAAGCTACTTGAGAATCTTTCCAGGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGGCCTCCGGATTCTGATCTTGGAGAGGCAGAAGAAGATCATGATGGAGATGAGACATGGGATCCAGATTCTGACATGGACGTTGATGTTGAACGTGAGCTTGTTCCAAGCAAAGTAAAGAAAGAAATAGTTGAACCACAGCTCAACGGTCTGGATGACCAGAGAAGAAGTGGGGAACATTTGAGAGTCTCTGATACTGCAGTTGCTGAAACTTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTTGAACAGAATACTGTGAATGATTTGACCAAATAG 1476 0.4255 MDTGSNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIQSKLLENLSRLQHAPSVQFQERPPDSDLGEAEEDHDGDETWDPDSDMDVDVERELVPSKVKKEIVEPQLNGLDDQRRSGEHLRVSDTAVAETCMKALDISSQKADEDNVKVEQNTVNDLTK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1896 491 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Vra5g1896 491 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 MobiDBLite consensus disorder prediction 400 417 - -
Vra5g1896 491 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Vra5g1896 491 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Vra5g1896 491 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Vra5g1896 491 PANTHER HISTONE DEACETYLASE 19 3 489 - -
Vra5g1896 491 Pfam Histone deacetylase domain 36 324 IPR023801 -
Vra5g1896 491 PANTHER HISTONE DEACETYLASE 3 489 - -
Vra5g1896 491 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Vra5g1896 491 PIRSF HDAC_I_euk 3 486 IPR003084 GO:0004407|GO:0016575
Vra5g1896 491 MobiDBLite consensus disorder prediction 384 417 - -
Vra5g1896 491 MobiDBLite consensus disorder prediction 472 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1896 Vra-Chr5 24720352 24734748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1896 K06067 - gmx:100795375 994.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1896 5 24720352 24734748 Vra5g1896 5 24720352 24734748 ECH