Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1893 ATGCCAATTTGCATCGAGACTTATCCCAGAATGTCTCCACGTCCACTGTTACTTTTCTTCGTCTTTATGCTTCTCTTTCACGCTCTACATTCTTCAGACGTTTCAACAACCAAAGCTTCTACGTCCCTTTATGATTGCGACCAATGTCATCGCGCTAAGGAACGCCACATTTCCACGAATAGAAACCGCCTCAATCCCAATGAAAAGGACATTGATATAATTGCAACATACAGCGGTGCTTCTGGCCATGTTAGACTTGCTAGGTTGAAAATGAGGGATTTATCTGATTCCTGGTTCTGGGAAAACCCTACTAATGGAAACAACGAGTATCAAAAGAGCACCCAGGAATCGATGGAATCGTATCAAACTGATTCAAGTTTTGAAGACAATTCCAAGCACTCCATAGATGAACGTAATCCTGAAGAAAACAAAGTTGAAATTCCCCATTCCTCGTTAATGACACCGATGAAGATCAAACGTCGAGTAATGCGGCAAGAAAGAAAGAAAGCCCGTACCGCTGAACTTACACAGGAAAACCGAGAAACTAACAATCACATTGTATCAGCAGCAATTAAACGCACTGAAGAATTTGATACCACTGTCAAGGGAAAGTATAGTATATGGAGGAGAGAATATGAAAACCCAAATTCTGATTCAACTCTGAAACTCATGCGTGATCAAATAATAATGGCCAAAGCCTATGCTAATATTGCAAAGTCTAAGAACAATACTGTTCTATATGAAGCTCTTCTCAAGCACTCCAGTGATAGTCAACGGGCTATAGGAGAAGCCAGTTCTGATACAGAGCTTCACCTTGGAGCACTTGATCGGGCAAAAGCTATGGGTCATGTTCTTTCCATAGCAAAGGATCAACTTTACGACTGCCTTTTGGTGGAAAGGAAATTAAGGGTGATGCTTCAATCAACAGAAGATAGAGTCAATGTACAGAAGAAAAGGAGTGCATTCTTGATTCAGCTGGCTGCAAAAACTGTGCCTAGACCATTACATTGTCTTCCCCTGCAACTTGCAGCGGATTATTACCTGCAGGGCTATCATAAGAAAGGAAATCTTGACAAAGAAAAGATTGAAGATCCATCTCTCTACCATTATGCTATATTTTCTGATAATGTGCTGGCTGCATCTGTGGTTGTTAATTCTACTGTGCAAAACGCGAAGGAACCTGAGAAGCATGTGTTCCATATAGTGACGGATAAATTGAATTTTGCAGCAATGAGAATGTGGTTTCTCACCAACCCTCCTTCTAGAGCAACTATTGAAGTTCAGAATATTGATGATTTCAAGTGGTTGAATTCCTCGTATTGTTCTGTTCTACGTCAACTTGAATCAGCAAGGATCAAGGAATATTACTTTAAAGCTAATAATCCTTCCTCCCTATCTGTTGGTTCTGACAATCTAAAATATAGAAATCCTAAATACTTGTCGATGTTAAATCACTTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTAAACAGAATTCTATTCTTGGATGATGACATTGTAGTGCAGAGGGATTTGACACCACTTTGGTCAGTTGATTTGAAAGGTATGGTGAATGGTGCTGTGGAAACGTGCAAGGAGAGCTTCCATAGGTTTGATAAATACCTAAACTTTAGTAATCCACTGATTTCCAATAACTTCAGTCCTGAGGCGTGTGGCTGGGCATTTGGCATGAATATTTTTGACTTGAAGGAGTGGAAGAAACGAAACATTACTGGTATCTATCATCGATGGCAAGATATGAATGAGGACAGAACCCTCTGGAAGCTTGGAACCTTACCTCCCGGACTAATCACCTTTTATAATCTGACCTATCCGTTAGATCGAGGATGGCATGTTTTGGGACTTGGCTATGACCCAGCTCTGAACCTGACAGAGATAGAGAATGCCGCTGTCATTCACTACAATGGAAATTACAAGCCATGGTTAAATCTTGCTGTTTCCAAATATAAATCTTACTGGTCCAGATATGTTAAGTTGGATAATCCATACCTTCGAGTTTGCAATCTTGGTGAATAG 2040 0.402 MPICIETYPRMSPRPLLLFFVFMLLFHALHSSDVSTTKASTSLYDCDQCHRAKERHISTNRNRLNPNEKDIDIIATYSGASGHVRLARLKMRDLSDSWFWENPTNGNNEYQKSTQESMESYQTDSSFEDNSKHSIDERNPEENKVEIPHSSLMTPMKIKRRVMRQERKKARTAELTQENRETNNHIVSAAIKRTEEFDTTVKGKYSIWRREYENPNSDSTLKLMRDQIIMAKAYANIAKSKNNTVLYEALLKHSSDSQRAIGEASSDTELHLGALDRAKAMGHVLSIAKDQLYDCLLVERKLRVMLQSTEDRVNVQKKRSAFLIQLAAKTVPRPLHCLPLQLAADYYLQGYHKKGNLDKEKIEDPSLYHYAIFSDNVLAASVVVNSTVQNAKEPEKHVFHIVTDKLNFAAMRMWFLTNPPSRATIEVQNIDDFKWLNSSYCSVLRQLESARIKEYYFKANNPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNRILFLDDDIVVQRDLTPLWSVDLKGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAFGMNIFDLKEWKKRNITGIYHRWQDMNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIENAAVIHYNGNYKPWLNLAVSKYKSYWSRYVKLDNPYLRVCNLGE* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1893 679 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 370 670 IPR029044 -
Vra5g1893 679 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 37 677 IPR029993 GO:0047262
Vra5g1893 679 MobiDBLite consensus disorder prediction 105 128 - -
Vra5g1893 679 Pfam Glycosyl transferase family 8 337 652 IPR002495 GO:0016757
Vra5g1893 679 SUPERFAMILY Nucleotide-diphospho-sugar transferases 368 675 IPR029044 -
Vra5g1893 679 PANTHER GALACTURONOSYLTRANSFERASE 3-RELATED 37 677 - -
Vra5g1893 679 MobiDBLite consensus disorder prediction 105 142 - -
Vra5g1893 679 CDD GT8_like_1 368 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1893 Vra-Chr5 24681523 24685029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1893 65 679 Glycosyltransferase AT4G38270 66.720 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1893 K13648 - gmx:100781749 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1893 5 24681523 24685029 Vra5g1893 5 24681523 24685029 ECH