Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1888 ATGGAGAACAGGGTAACATTACAAGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACGGCGGTGCAGCTGAAGGCAGCTCTGGCTGTGGGCAACCTGCAATTCCCCCTCTCAGTGGTTCACCAGATGATCAGGATGTACGATTTCGACAGAAATGGTACCATGAGCTTTCAAGAATTTGTTGCACTCAACAACTTCCTTCTTAAGGTTCAACATGCATTTTCGGACCTAGAGAGGGGTCGTGGTTTTCTTGTGCCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCACGCTGGATTCTCCTGCTTTTTACACTGTCTGTGAGAGCTTTGATCAAAGTAAAAATGGAAGGTTTCGGCTGGACGACTTCATATCAATCTGTATATTCTTACAATCTGCACGGAATCTGTTTAATTCTTTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTGTATTGTACTGCCAATTGCAGAATATGA 510 0.4275 MENRVTLQEWFDRVDSEKSGSITAVQLKAALAVGNLQFPLSVVHQMIRMYDFDRNGTMSFQEFVALNNFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFTLDSPAFYTVCESFDQSKNGRFRLDDFISICIFLQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1888 169 PANTHER PEFLIN 6 165 - -
Vra5g1888 169 SUPERFAMILY EF-hand 2 165 IPR011992 -
Vra5g1888 169 CDD EFh_PEF_ALG-2_like 6 167 - -
Vra5g1888 169 Pfam EF-hand domain pair 19 66 IPR002048 GO:0005509
Vra5g1888 169 Gene3D - 1 167 - -
Vra5g1888 169 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Vra5g1888 169 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vra5g1888 169 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vra5g1888 169 SMART efh_1 6 34 IPR002048 GO:0005509
Vra5g1888 169 SMART efh_1 42 70 IPR002048 GO:0005509
Vra5g1888 169 PANTHER PEFLIN 6 165 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1888 7 131 EF-hand Containing Proteins AT5G04870 27.273 6.52e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1888 - - gmx:100792880 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1888 5 24607685 24610738 Vra5g1888 5 24607685 24610738 ECH