Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1887 ATGAACAACACCAGCATTCTCATCCAATTGGTTTCCTCGCCTCCCACATGGGCAACTGTAATCGCAGCCGCATTTCTCCTCACTACCCTCACCCTCTCCATGTATCTTCTGTTCGAGCATCTTTCCGCTTACAAGAATCCCGAGGAGCAGAAGTTTTTGATTGGGGTTATCCTTATGGTTCCCTGTTATTCTATTGAATCGTTTGTATCATTGGTCAATCCATCAATCGGGGTCGATTGCGAGATTCTCCGGGACTGCTATGAATCCTTTGCCATGTATTGCTTTGGAAGATACCTTGTTGCCTGCCTTGGTGGCGAGGAACGGACCATTCAGTTTATGGAAAGACAGGCTCGTCTCTCTGTTAAAATTCCTCTTCTGCAACATTCTTCTGACAAGGCCACTATTAACCATCCCTTTCCTCTCAACTACTTCTTTAAACCCTGGAAACTCGGTCATCGCTTCTACCAAATTGTTAAATTTGGCATTGTTCAATATATGCTAATCAAAGCTTTCACTGCTATTCTCGCTGTAATTCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGGTATCCTTATACGGCAGTNGTTCTGAATTTTAGTCAGTCGTGGGCTTTGTACTGCCTTGTTCAGTTTTATACTGTTACAAAGGATGAACTGGCTCATATAAAACCGTTGGCCAAGTTTTTGACATTTAAATCAATTGTGTTCCTCACTTGGTGGCAAGGTGTGGCAATTGCTCTCCTGTGCACCTTTGGTCTGTTCAAAAGTCCCATTGCTCAAGGCTTGCAGTTCAAGTCAAGTGTCCAAGATTTCATCATTTGCATTGAGATGGGAATTGCTTCCATAGTTCACCTGTATGTGTTTCCAGCCAAGCCTTATGAGCTAATGGGAGACCGCTTTCCTGGAAGCGTTTCAGTTCTGGGAGATTACTCTGCTGACTGTCCTCTGGACCCTGATGAAATTAGGGACAGTGAGAGACCCACAAAGCTGCGTCTTCCTACACCAGATGATGATACCAAGAGTGGGATGACAATTAGAGAGAGTGTTCGTGATGTTGTTATTGGTGGTGGTGGATATATTGTTAAGGACGTGAAGTTCACTGTTCATCAAGCTGTGGAGCCCGTGGAAAAGGGGATTACTAAATTCAATGAAAAACTACATAGAATCTCCGAAAATATTAAGAAACATGACAAAGATGGAAGAAGAACCAAGGATGATAGTTGCATTGCCTCATCATTACCTGCAAGGAGAGTGATTCGGGGAATTGATGACCCCCTCTTGAATGGGAGTGTCAGCGATAGTGGCATGTTGAGGGGGAAGAAACACAGAAAGAAATCTGGATGTGCAAGTGGAGAGAGTGGAGGTGAGAGCAGTAGTGATCAAAGCTTTGGAGGCTACCAGATTAGAGGCCGTAGGTGGGTAACTAAAGAGTAA 1452 0.4394 MNNTSILIQLVSSPPTWATVIAAAFLLTTLTLSMYLLFEHLSAYKNPEEQKFLIGVILMVPCYSIESFVSLVNPSIGVDCEILRDCYESFAMYCFGRYLVACLGGEERTIQFMERQARLSVKIPLLQHSSDKATINHPFPLNYFFKPWKLGHRFYQIVKFGIVQYMLIKAFTAILAVILEAFGVYCEGEFKVGCGYPYTAVVLNFSQSWALYCLVQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLCTFGLFKSPIAQGLQFKSSVQDFIICIEMGIASIVHLYVFPAKPYELMGDRFPGSVSVLGDYSADCPLDPDEIRDSERPTKLRLPTPDDDTKSGMTIRESVRDVVIGGGGYIVKDVKFTVHQAVEPVEKGITKFNEKLHRISENIKKHDKDGRRTKDDSCIASSLPARRVIRGIDDPLLNGSVSDSGMLRGKKHRKKSGCASGESGGESSSDQSFGGYQIRGRRWVTKE* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1887 483 MobiDBLite consensus disorder prediction 457 471 - -
Vra5g1887 483 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 10 477 IPR005178 -
Vra5g1887 483 MobiDBLite consensus disorder prediction 436 483 - -
Vra5g1887 483 MobiDBLite consensus disorder prediction 324 348 - -
Vra5g1887 483 Pfam Organic solute transporter Ostalpha 19 299 IPR005178 -
Vra5g1887 483 PANTHER PROTEIN LAZ1 10 477 IPR031171 GO:0009626
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1887 Vra-Chr5 24602385 24607495 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1887 - - pvu:PHAVU_009G116100g 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1887 5 24602385 24607495 Vra5g1887 5 24602385 24607495 ECH