Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1885 ATGAAGAAGAATAGAATGATATGGAGCGTAGGAGTGATGCTGTGGACACTGTTCGTCGGAGGAAGCTGGGGAGAGCAGTGTGGACGCCAAGCAGGGGGTGCACTGTGCCCAGGGGGTCTCTGTTGCAGTCAGTTCGGCTGGTGCGGCTCCACCGATGACTACTGCGGCCGGGGTTGCCAGAGCCAGTGCGGGGGAGGACAGCCCGCTCCAACTGATCTCACCGCTCTCATACCCAGGGCCACCTTCGACCAGATGCTCAAACATCGCAATGACGGAGCCTGCCCAGCCAGAGGCTTCTACACCTACGATGCCTTCATCGCCGCTGCCAGAGCTTTCCCCAGCTTCGGCAACACCGGAGACACAGCCACTCGAAAGAGGGAGATTGCGGCCTTCTTCGGGCAAACGTCTCACGAAACAACCGGAGGATGGCCCAGTGCACCTGACGGACCATACGCATGGGGATACTGCTTCCTGAGAGAGCGGAACCCAAGCGATTACTGCTCCCCAACTCCCCAGTTCCCCTGCGCTTCTGGCCAGCAATACTATGGCAGGGGTCCCATCCAGATATCCTGGAACTACAACTACGGTCAGTGCGGAAATGCAATTGGGGTGGATTTGATCAACAATCCTGATCTCGTCGCCACTGACGCCGTCGTCTCCTTCAAGTCCGCCATCTGGTTCTGGATGACTCCACAGTCCCCCAAGCCTTCTTCTCACAACGTCATCACCTCTCAATGGACCCCCTCCGCAGCCGACGTTGCCGCCAGGAGGCTTCCGGGCTACGGCACTGTGACGAACATCATCAACGGAGGCCTGGAGTGCGGCAGAGGACAGGATAGCAGGGTGGAGGACCGCATCGGGTTCTTCAAGAGATACTGTGATCTGCTTGGTGTTGGCTATGGCAACAACCTTGACTGCTACTCTCAGACCCCATTCGGAAATTCTGTGCTTAATCTCCATCCCTTCGTCTGA 972 0.5772 MKKNRMIWSVGVMLWTLFVGGSWGEQCGRQAGGALCPGGLCCSQFGWCGSTDDYCGRGCQSQCGGGQPAPTDLTALIPRATFDQMLKHRNDGACPARGFYTYDAFIAAARAFPSFGNTGDTATRKREIAAFFGQTSHETTGGWPSAPDGPYAWGYCFLRERNPSDYCSPTPQFPCASGQQYYGRGPIQISWNYNYGQCGNAIGVDLINNPDLVATDAVVSFKSAIWFWMTPQSPKPSSHNVITSQWTPSAADVAARRLPGYGTVTNIINGGLECGRGQDSRVEDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSVLNLHPFV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1885 323 SUPERFAMILY Lysozyme-like 74 313 IPR023346 -
Vra5g1885 323 PRINTS Chitin-binding domain signature 34 42 IPR001002 GO:0008061
Vra5g1885 323 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Vra5g1885 323 PRINTS Chitin-binding domain signature 49 56 IPR001002 GO:0008061
Vra5g1885 323 SUPERFAMILY Plant lectins/antimicrobial peptides 26 67 IPR036861 GO:0008061
Vra5g1885 323 SMART ChitinBD_3 26 63 IPR001002 GO:0008061
Vra5g1885 323 CDD ChtBD1_GH19_hevein 25 64 - -
Vra5g1885 323 CDD chitinase_GH19 77 306 - -
Vra5g1885 323 Gene3D - 76 307 - -
Vra5g1885 323 Pfam Chitinase class I 77 306 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra5g1885 323 Gene3D Endochitinase, domain 2 159 215 - -
Vra5g1885 323 PANTHER CHITINASE-RELATED 10 312 - -
Vra5g1885 323 ProSitePatterns Chitinases family 19 signature 2. 219 229 IPR000726 GO:0004568|GO:0006032|GO:0016998
Vra5g1885 323 PIRSF Endochitinase 1 313 IPR016283 GO:0004568|GO:0005975
Vra5g1885 323 ProSitePatterns Chitin recognition or binding domain signature. 36 55 IPR018371 GO:0008061
Vra5g1885 323 ProSiteProfiles Chitin-binding type-1 domain profile. 24 65 IPR001002 GO:0008061
Vra5g1885 323 Pfam Chitin recognition protein 26 63 IPR001002 GO:0008061
Vra5g1885 323 Gene3D - 24 66 IPR036861 GO:0008061
Vra5g1885 323 PANTHER CHITINASE (CLASS IB) / HEVEIN 10 312 - -
Vra5g1885 323 ProSitePatterns Chitinases family 19 signature 1. 94 116 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1885 Vra-Chr5 24593067 24594363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1885 25 318 Glycoside Hydrolase AT3G12500 71.237 1.27e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1885 K20547 - pop:7470435 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1885 5 24593067 24594363 Vra5g1885 5 24593067 24594363 ECH