Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1882 ATGGAAGGGTTGGCGCTTCTTCCATTTGCACAGTCACAATTCCTCCTACCGCTTCCAAAGGTTGCCGCCATTCCCATTCCACACAATAGTAACACTAATGATAATAATACCAATGGATTTCTGTCTCTCAGACCGCACCGTCGACGTGGGTTTCGTTTTCGCGCTTCGTTGTTTTCCAAGGCACAAGGTGTTCCTCTTCCCCAACACCAACAACAACAGCAGCAAGTCACAGTGAATCCCAATTCTGTGAGTGGGGATTCCATACGTCAGAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAAGCTTCTTCCCAGCGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCCGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAGAGATGCATCCGTACTAATGATATCAACAATGTTGGCCTGACTGCCAGACACCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCCCCGGACCGATTGTGGGTTAGTGTTTATAAAGATGATGATGAGGCTTTTCAGCTATGGTCTAATGAGGTTGGTGTCCCAGTTGAACGCATAAAAAGGTTGGGAGAAGAAGATAACTTCTGGACTAGTGGGGTGACAGGTCCCTGTGGTCCTTGTTCAGAACTTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCTGATCTCAATGACGATACAAGGTTTATAGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAAGACGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGTCTTGGACTGGAGCGTTTGGCTCGTATTCTTCAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGAAGGCCTCTAAGTTAGCAAATGTTTCTTATGGTTTTGCTGATGATCAGACAAAGAGGAATCTGAAAATTATAGGAGATCATATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAGGGGAGACCTTGAAGGAGCGTTTTTACCGATTATTGCTGAGAAGGTAGTGGAATTAAGTACACAGATTGATGCTGATTTGAAGAACAAAGCACCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAGAGAGGAGAAAAGTTGCTTGAGGAGAAACTTTCTGATGCTTTATCAAATGCAGAAAGAAGTGGAACCGTTCCTTGCTTGGCTGGAGAAGATGTGTTTCTGTTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCTCATAATACTGTCAGACTTGCCATTGAAAATGGGGAAAATGTTGCTGAGAATGTACGTGACACCGAATTTATAGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCTTAATGGTGAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATAATCAATCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAATCTTTAGGCAATATATTTGTGCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATTTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTTAAAAAGGTTATTGGTCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGATTTGATTTCAACTTCCACCGACCACTTCGTGATAGTGAGCTTGCTGAAATTGAACTGCTGATCAATGGATGGATTGAAGATGCAACACTACTTCAAACCAAAGTGATGCCCCTTGCTGATGCAAAAAGTGCTGGGGCAATTGCAATGTTTGGAGAAAAATACGGAGAAGAGGTACGTGTGGTAGAGGTTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCATGTCAATAATACTTCTGAAATTCGTGGCTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGAATTGAAGCTGTAGCTGGCGAAGCCTTCATTGAATATATCAATGCCCGTGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTTTTGGAGGAGTTACGGGTAGTTAGAAATGAAAATTCTGCTGTGCGTGCAAAGGCAGCAATCTACAAAGCTTCAGGTATTGCGAGCAAACGATTGTTGGTGGGGAATTCAAAACAGTACAGGGTGCTAGTTGAGTCCTTCGATGACGTTGATGCTGAATCACTTAAAAGTGCGGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCTGTGGTACTGGGCTCATGTCCAGGTGAGGGGAAGGTTAGCTTAGTTGCTGCTTTTTCTCCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATTGCAAAATTATGCGGCGGTGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCAGGTGGGAGGAAGCCTGAAAACTTGTCAAGTGCCCTCGATAAGGCTCGGTCGGAACTCGTGGCTACTCTAAGTGAAAAAGGGAGTTGA 2949 0.4347 MEGLALLPFAQSQFLLPLPKVAAIPIPHNSNTNDNNTNGFLSLRPHRRRGFRFRASLFSKAQGVPLPQHQQQQQQVTVNPNSVSGDSIRQRFLHFYASRGHKLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDINNVGLTARHHTFFEMLGNFSFGDYFKKQAILWAWELSTSEFGLPPDRLWVSVYKDDDEAFQLWSNEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSELYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERLARILQQVPNNYETDLIFPIIEKASKLANVSYGFADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSTQIDADLKNKAPRIFEELKREELRFVQTLERGEKLLEEKLSDALSNAERSGTVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVRLAIENGENVAENVRDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDNQSKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDLKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIELLINGWIEDATLLQTKVMPLADAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVNNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRVVRNENSAVRAKAAIYKASGIASKRLLVGNSKQYRVLVESFDDVDAESLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFSPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLSSALDKARSELVATLSEKGS* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1882 982 Gene3D - 796 857 - -
Vra5g1882 982 Gene3D - 720 773 - -
Vra5g1882 982 PANTHER ALANYL-TRNA SYNTHETASE 84 973 - -
Vra5g1882 982 CDD AlaRS_core 86 315 - -
Vra5g1882 982 SUPERFAMILY ThrRS/AlaRS common domain 648 807 IPR018163 GO:0000166
Vra5g1882 982 Hamap Probable alanine--tRNA ligase, chloroplastic. 72 979 IPR027522 GO:0009507
Vra5g1882 982 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 84 973 - -
Vra5g1882 982 Coils Coil 828 848 - -
Vra5g1882 982 TIGRFAM alaS: alanine--tRNA ligase 88 956 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 Pfam tRNA synthetases class II (A) 88 650 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Vra5g1882 982 Pfam DHHA1 domain 829 971 IPR003156 GO:0003676
Vra5g1882 982 Gene3D - 569 648 - -
Vra5g1882 982 Gene3D - 659 794 - -
Vra5g1882 982 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 83 805 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Vra5g1882 982 Hamap Alanine--tRNA ligase [alaS]. 84 977 IPR023033 GO:0004813
Vra5g1882 982 SUPERFAMILY Class II aaRS and biotin synthetases 85 319 IPR045864 -
Vra5g1882 982 SMART tRNA_SAD_4 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vra5g1882 982 SUPERFAMILY Translation proteins 543 648 IPR009000 -
Vra5g1882 982 PRINTS Alanyl-tRNA synthetase signature 151 162 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 PRINTS Alanyl-tRNA synthetase signature 273 284 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 PRINTS Alanyl-tRNA synthetase signature 300 313 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 PRINTS Alanyl-tRNA synthetase signature 351 367 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 PRINTS Alanyl-tRNA synthetase signature 375 388 IPR002318 GO:0000166|GO:0005737
Vra5g1882 982 Gene3D - 865 973 - -
Vra5g1882 982 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 320 548 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Vra5g1882 982 Gene3D Bira Bifunctional Protein; Domain 2 83 316 IPR045864 -
Vra5g1882 982 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1882 Vra-Chr5 24570171 24575962 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1882 K01872 - gmx:100817906 1684.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1882 5 24570171 24575962 Vra5g1882 5 24570171 24575962 ECH