Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1879 ATGTCGTGTTTGTTGCCGCACTTCAATTGCCACCTCGACACTTTCAGGAACCATCCGTCTGCTCTTCCTACCCATCTATCAAGAACAAGATCAAATTTCTGTTTCCAGCCGCAATGTCTATTGTCCCCCACGTCGTCTTCAACTTTGCTTAATTTGGAAAAGAAGTTGGTATTGGATGCTCCTTCTGATCCAAACACGTCTTGGCCCTATGTCACGGCTGTTGCCCCTCCCACGCAGGCAAATTTTAAATCAACCTTATCTACGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGCTGCTGCTGCATCTGAAGCCCTTGCTCTTGCTAAAGCAGCCGTGAAGGTTGCAAAGGATGCAGCTTTACTAGTAAAAAAGAAGCCTCGAGCAGAATCAAAGTATAAATCCCATGTTTCTTCCAAGTCTGATGATTTATTTCTCAAATGGTTTCAACATATGGATGTGGAAAATGGTGTAGCAGGGGAATCCATGGGTGCTGGAGCAGAAATGGTGGAAGGTGTTGACCTAAGCCCCAGCGAAGAGGAATCTGATGTAGAACCTTCCCATGAGGAACTTGAGCGCCTGCAGGAACAGCTTTCCAACAGTATAGCTGTAAGATCTAAGCGCCAACCAGAAAGAAAAGCTAAAAGAGACAGAGCAGCAGAGAAGGTTTCCACAAATGTTGCATCTTTTAAGCCTGGCTCCTCCAGCAGAAGAAAGCGTGTTTCTGTGCAAGAAATAGATTATTCAGATCCACTTCGTTACTTAAGAACAACAACCATGACTTCTAGACTTCTCACCTCAACTGAAGAAATCAAGTTGTCAGAAGGAATACAGGACCTTCTAAAGCTTGAAAGACTTCAGGAGGATCTTGTAGAAAGATGTGGTGGTCAGCCCACATTTGCCCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACACTTAGGAAACGCTTAAATTATGGTAGATTTTGCAAAGACAAAATGATTAAAAGCAATATAAGACTTGTCATATCAATTGCAAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGGGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTACCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAATTGCTTAGTGCAAATGGAAGACAACCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCTATGAAGAGGCTTACTGCTGTGCTTTTGACTCCGAAAGCTCCCAGATCTCTGGAACAGAAGATTGGAATCAACCAAAATCTTAAACCTTCAGAAATAATTTCTGATCCTGATGCCGAATCAGCTGAAGAACAGCTCCTTAAGCAATTCATGAAGAAGGACCTGCAAGAGGCACTTGACAGTCTTAGTTCAAGGGAGAGGCAGGTGGTAAGATGGAGGTTTGGTATGGATGATGGAAGGACGAAGACCCTCCAAGAGATAGGGGAGATGATGGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAGTCGAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAAACATTTCCAGCAGTATTTGGTTCCATAA 1692 0.4362 MSCLLPHFNCHLDTFRNHPSALPTHLSRTRSNFCFQPQCLLSPTSSSTLLNLEKKLVLDAPSDPNTSWPYVTAVAPPTQANFKSTLSTESLLTNEEAVIAAAASEALALAKAAVKVAKDAALLVKKKPRAESKYKSHVSSKSDDLFLKWFQHMDVENGVAGESMGAGAEMVEGVDLSPSEEESDVEPSHEELERLQEQLSNSIAVRSKRQPERKAKRDRAAEKVSTNVASFKPGSSSRRKRVSVQEIDYSDPLRYLRTTTMTSRLLTSTEEIKLSEGIQDLLKLERLQEDLVERCGGQPTFAQWAAVAGVDQKTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSANGRQPDDEEVAEATGLSMKRLTAVLLTPKAPRSLEQKIGINQNLKPSEIISDPDAESAEEQLLKQFMKKDLQEALDSLSSRERQVVRWRFGMDDGRTKTLQEIGEMMGVSRERIRQIESSAFKKLKNKKRTKHFQQYLVP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1879 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 559 IPR013324 -
Vra5g1879 563 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB-LIKE 50 561 - -
Vra5g1879 563 PIRSF Sigma_factor_SigC 14 563 IPR016262 -
Vra5g1879 563 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 327 551 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 Gene3D RNA Polymerase Primary Sigma Factor 168 401 - -
Vra5g1879 563 Gene3D - 483 563 IPR036388 -
Vra5g1879 563 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 250 399 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 Pfam Sigma-70 region 3 408 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 MobiDBLite consensus disorder prediction 207 223 - -
Vra5g1879 563 Pfam Sigma-70, region 4 497 549 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 Gene3D - 402 478 IPR036388 -
Vra5g1879 563 Pfam Sigma-70 region 2 329 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vra5g1879 563 MobiDBLite consensus disorder prediction 173 243 - -
Vra5g1879 563 CDD Sigma70_r4 491 544 - -
Vra5g1879 563 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 50 561 - -
Vra5g1879 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 397 448 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1879 Vra-Chr5 24538034 24543236 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1879 - - gmx:100788815 929.087