Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1878 ATGAAGAAGAAGATGAAGAGGAACAACACTTCCACTTCTATTTCAGTTCGGGAGGGCTCAAGCAACGAACCATCTTCATCACCTTCATCACCTTCATCCTCTGCTCAATTTCTCTTTCACAAAGACAATGGGAATGGAGAACAAACCCTCGTGCCTCTCAACCCCAACCTCAACCTCAACCTCGACGATGGCTTCTATGAAATCGAAACCATACGACGTAGGAGGATACGCAAGGGTCAGCTGCAGTACCTAATCAAATGGCGTGGATGGCCTGAGACTGCCAATACCTGGGAGCCTCTTGAAAATCTGCAGTCCGTTCCTGATCTCCTTCGTGCTTTTGAGGAGGACAGTTTTCGCAAGCGCAAGCGCAAGCATGTCGTTCATCACGCCAAGATCAGGAAGCATCCTCAACGTTCTACCACTTCTTACAGCCTTAGACACTTTCCTACTCACAACCCCCATTCTCAAACTCCCAGCTTCCCTCACCATCCTCTTCCTACCACCCTTCCTCAACCCCAACAAACCAATGAAAATACCTTTGCAGATCATCACCAAAATGATTATGATCCAAAGCTCTGTGAACTTAAGGCAACAACAAACACTGGCCTTGAGCTAGATAACCTTGGATTGCATTTCCAGCAACTTAAGGTTTCAACTGCCATTTGTAGTCACCTAGATTGCGAGGAACCAACTCAAACTGGGCGCTGCAGAGGAGCTAAAAGGAGAAAATGTGGTCCTGTCAAGAGGTTCAAGAGAGATACGGGTGTCGGGAAGCCTGTTGATGATCAGAATGCAATCAGCATGCCTGTTGGTGCAGTTGAACCAGGCTGCACGAGAACCACTGGTTGTGTGGGGAATAATAGTTCTTTGAAGATGGATGATGCTAAAACTGCCTGCAATATTGTCAAGATTTTGAAGCCAATAGGTTATTCATCTTCTTTATCCGACAACATGCAGGATGTTTTAGTGACATTTATGGCCATGAGGTCTGATGGAACAGAAGTGATGGTGAATAACAGATATCTCAAGGCATATAATCCACTTCTGCTGATCAATTTCTATGAGTTGCATCTCCGGTATTGTCCTACATTGTAA 1095 0.4548 MKKKMKRNNTSTSISVREGSSNEPSSSPSSPSSSAQFLFHKDNGNGEQTLVPLNPNLNLNLDDGFYEIETIRRRRIRKGQLQYLIKWRGWPETANTWEPLENLQSVPDLLRAFEEDSFRKRKRKHVVHHAKIRKHPQRSTTSYSLRHFPTHNPHSQTPSFPHHPLPTTLPQPQQTNENTFADHHQNDYDPKLCELKATTNTGLELDNLGLHFQQLKVSTAICSHLDCEEPTQTGRCRGAKRRKCGPVKRFKRDTGVGKPVDDQNAISMPVGAVEPGCTRTTGCVGNNSSLKMDDAKTACNIVKILKPIGYSSSLSDNMQDVLVTFMAMRSDGTEVMVNNRYLKAYNPLLLINFYELHLRYCPTL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1878 364 MobiDBLite consensus disorder prediction 149 185 - -
Vra5g1878 364 SMART ChS_2 290 363 IPR008251 GO:0005634
Vra5g1878 364 SUPERFAMILY Chromo domain-like 60 117 IPR016197 -
Vra5g1878 364 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 34 363 IPR044251 GO:0006325|GO:0031507
Vra5g1878 364 CDD CD_CSD 66 115 - -
Vra5g1878 364 MobiDBLite consensus disorder prediction 8 49 - -
Vra5g1878 364 ProSiteProfiles Chromo and chromo shadow domain profile. 66 125 IPR000953 -
Vra5g1878 364 SMART chromo_7 65 118 IPR000953 -
Vra5g1878 364 PRINTS Chromodomain signature 63 71 IPR017984 -
Vra5g1878 364 PRINTS Chromodomain signature 76 90 IPR017984 -
Vra5g1878 364 PRINTS Chromodomain signature 91 103 IPR017984 -
Vra5g1878 364 ProSitePatterns Chromo domain signature. 83 103 IPR023779 -
Vra5g1878 364 MobiDBLite consensus disorder prediction 1 49 - -
Vra5g1878 364 Gene3D - 56 117 - -
Vra5g1878 364 Pfam Chromo (CHRromatin Organisation MOdifier) domain 66 115 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1878 Vra-Chr5 24534188 24537556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1878 - - vra:106759947 664.07