Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1874 ATGACGATCCATTCGATAGTGATACAGAAGCTGCTGAGCACGAATGCGCAGGTGGGTCGACGAGTTGTTGCTCACCATTTCAAGGGCTACACCTATGGCTTCCGCAACAGAATGGCCATCATCGACTCCGACAAAACCCTCATTTGCATGCGCAGCGCCTTCAACTTCATCGCCTCCCTTGCCCGCCACAACGCCCGCTTCATGTTCATCAACACCAACCCTCTCTTCGACGACATCTTCAACCTCATGACCAAGAAGGTTGGCTCCTACTCCTCCTCCACCAGCTCCCTCTGGCGCACCGGCGGCTTCCTCACCAACAGCTACAGCCCCAAGAAGTTCCGCTCCCGCAACAAGAAGCTCGTCTTCGGTCCCACCCAGTCCCCCGATTGCATCGTCATTGTCGACACCGACCGCAAGTCTAGCGTTATCAACGAGGCTTTCAAGCTTCAAATTCCCGTTGTTGCATTGGTCGACTCCGCCATGCCCACCGATGTCTACAACCGCATTGCTTATCCTGTTCCCGCCAACGATTCTGTTCAATTTGTTTATCTGTTCTGTAATTTGATTACCAAAACACTGCTTCATGAGAAGAGCAAGGCTGCTGCTGCTGCGGCCGATTCTCGAGAAGAAGCTCTGCGCAAGGGCAAGAGCAAGAGCAAGAGCATGAGCGATTTGGATAAGGTCGACATAACCGTAGTTCCCTATGCTAGTTTAGCTCCCTTACCCGAAGATACAGAGGAAACTAAGAAGCTTTTGGACAAGTTTGTTGTTTTAAAGTTCAATGGTGCCCAAGGAAGAAATATGGATCTTGATGGTCCCAAATGTGCAATTAATGTTAGTGATGGACAGACGTTCCTGGACATGATCATTAACCAGATTGAGATGCTCAACTCCAAGTATGGATGCAGGGTTCCTTTGCTGCTTTTCGACAAAAATGATATTGGGGATCATAAACTAAAGGTTTTGGAGAAGTATTCGAAATCAAGTGTTGAAGTGCACACATTGAAGCCGGGTGAAAGTGGAGAATTGAAATTATCGGGTGAACATTCCAGTAAGGAGGAAATGCATCCATTTGATGATGTGGAGGTGTTCCGTTCACTCATGACTGGTGGAACCCTTGATTCGTTATTGTCACAGGGTAAAGAGTATATCCTAGTGTTGAAGTCAGACAATGTGGCAACAATTGTTGATCCAAATATACTAAATCATTTGATGATAAATGATATTGAATATTGCATGGAGGTGACACCAAACCAATCATTTAACTTAATCTTAACTGCAATGAAATTTAAGCTTGGGGAGATTGCCCGAAACCAAGATAAAAATTTGAAGAACAATTTCAAACTCATCGATACAACAAACATGTGGGTGAGTTTAAGAGCCATCAAGAGATTTGTTGATGCTGATGAACTAAAGCAGGAGAAGCCCTCAGTTTTTAAGTTCTTTGGCAATGTAATTGGTGTGTCCGTGCCCGAATCTCGGTTTTTTCCATTGGATGTAACATCAGATCTATTACTTCTCCAGTCGGATCTATACACTTGTAGAGAAGGTGTTTTAACTCGCAATCCAGCTAGAACTAATCATTCAAATCCTGTGATAGACTTGGGACCTGAATTTGAAAAGATTAGTGACTTCCAAAGTCGTTTCAAATCCATTCCAAGCATCATTGAGCTGGATAGTTTGAGGGTGAGAGGTGATGTGTGGTTTGGAGCTAATATTACTTTGAAGGGGCGAGTGACTATTTCTACAAAACCTGACTTGAAATTGGAAATTCCAGATGGGGTGACGATTGAGAATAAGGAGATCAACGACCTTGCAGATATCTGA 1827 0.445 MTIHSIVIQKLLSTNAQVGRRVVAHHFKGYTYGFRNRMAIIDSDKTLICMRSAFNFIASLARHNARFMFINTNPLFDDIFNLMTKKVGSYSSSTSSLWRTGGFLTNSYSPKKFRSRNKKLVFGPTQSPDCIVIVDTDRKSSVINEAFKLQIPVVALVDSAMPTDVYNRIAYPVPANDSVQFVYLFCNLITKTLLHEKSKAAAAAADSREEALRKGKSKSKSMSDLDKVDITVVPYASLAPLPEDTEETKKLLDKFVVLKFNGAQGRNMDLDGPKCAINVSDGQTFLDMIINQIEMLNSKYGCRVPLLLFDKNDIGDHKLKVLEKYSKSSVEVHTLKPGESGELKLSGEHSSKEEMHPFDDVEVFRSLMTGGTLDSLLSQGKEYILVLKSDNVATIVDPNILNHLMINDIEYCMEVTPNQSFNLILTAMKFKLGEIARNQDKNLKNNFKLIDTTNMWVSLRAIKRFVDADELKQEKPSVFKFFGNVIGVSVPESRFFPLDVTSDLLLLQSDLYTCREGVLTRNPARTNHSNPVIDLGPEFEKISDFQSRFKSIPSIIELDSLRVRGDVWFGANITLKGRVTISTKPDLKLEIPDGVTIENKEINDLADI* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1874 608 PANTHER - 1 608 IPR016267 GO:0003983|GO:0006011
Vra5g1874 608 CDD RPS2 11 194 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 1 608 - -
Vra5g1874 608 Gene3D Hexapeptide repeat proteins 500 608 - -
Vra5g1874 608 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 584 IPR029044 -
Vra5g1874 608 SUPERFAMILY Ribosomal protein S2 8 202 IPR023591 -
Vra5g1874 608 Pfam UTP--glucose-1-phosphate uridylyltransferase 220 474 IPR002618 GO:0070569
Vra5g1874 608 Pfam UTP--glucose-1-phosphate uridylyltransferase 479 576 IPR002618 GO:0070569
Vra5g1874 608 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 188 498 IPR029044 -
Vra5g1874 608 Pfam Ribosomal protein S2 125 193 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 Pfam Ribosomal protein S2 12 108 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 PRINTS Ribosomal protein S2 signature 8 26 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 PRINTS Ribosomal protein S2 signature 128 145 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 PRINTS Ribosomal protein S2 signature 145 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra5g1874 608 PRINTS Ribosomal protein S2 signature 169 183 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1874 Vra-Chr5 24513436 24527749 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1874 K00963 - gmx:100812583 947.962