Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1860 ATGGCAATTGAAGCGCAGTTTTATGGTTCAAACAATTTGATGGTGTTTTTCAATTCTCAACAATATAAGCATAATCTGCAGCAATCAGGGCAACAACAATGGCTGCACCAAGCTAGGCAGATGACTCAAAACACGTCTCTTGTTGATCCCGTCTTTTCTTCTTTTTCCAATTCAAATGCCCAGATGAATGCTTTCCACAAGTACAATCATAACGCTCAACCTTTAGCCTCCTATCCTCATCAAAGCTTCGCTACTCAACTTGATGAACAGAGAGAGATTGATCACTATATCAGATCTCAGAATGAAAAGTTGAGAGTTTTTCTGCAAGAGCAAAGAAAACAGCATATGGCGGAGTTATTGAAGAAGATGGAATGGAATGCTCTTCATTTACTGAGACAGAAAGATGAAGAAATAGTGGAAGCGGCGAAGAAAACGAGGGAGTTGAAAGAGTTTTTGACAAGGTTGGAGGTAGAGAAGGAATCGTGGAGAAAGGTGGCAGAGGAAAACGAGGCTATGGTATTGTGTCTTCATAACAACATAGAACGGATGAAAGAAAGAGCGGTGCATGGAATGACATCAGAGGATGCAGAGTCGTGTTGCGATGATAACGTGGGAATCACAGCATCAATGGGGGAAGGAACAGGAGAAAAGAGAGGTAGGCGTGGTGGGGTAGGAGAAATTGAAGAAATTAGGAAAAAGACAATGGATTGCAAACGTTGTAATTCTCAAAAATCGTGTTTTATGTTTCTTCCTTGCAGGCATCTCTGTTCGTGTAAAACTTGTGAGCCTTTTCTACAAGTTTGTCCTGTCTGTAGTACACCCAAAAAGTCTAGCATAGAGACTTTAATTGTATGA 855 0.4082 MAIEAQFYGSNNLMVFFNSQQYKHNLQQSGQQQWLHQARQMTQNTSLVDPVFSSFSNSNAQMNAFHKYNHNAQPLASYPHQSFATQLDEQREIDHYIRSQNEKLRVFLQEQRKQHMAELLKKMEWNALHLLRQKDEEIVEAAKKTRELKEFLTRLEVEKESWRKVAEENEAMVLCLHNNIERMKERAVHGMTSEDAESCCDDNVGITASMGEGTGEKRGRRGGVGEIEEIRKKTMDCKRCNSQKSCFMFLPCRHLCSCKTCEPFLQVCPVCSTPKKSSIETLIV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1860 284 Pfam Zinc finger, C3HC4 type (RING finger) 236 277 - -
Vra5g1860 284 Gene3D Death Domain, Fas 122 245 IPR011029 -
Vra5g1860 284 PIRSF SBP1_RNase_bind 4 284 IPR017066 -
Vra5g1860 284 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 283 IPR017066 -
Vra5g1860 284 Gene3D - 32 279 - -
Vra5g1860 284 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 283 - -
Vra5g1860 284 Gene3D - 56 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1860 Vra-Chr5 24429050 24430541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1860 237 273 Miscellaneous Gene Families AT4G39050 43.243 9.44e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1860 K19042 - gmx:100815248 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1860 5 24429050 24430541 Vra5g1860 5 24429050 24430541 ECH