Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1858 ATGGAACACACCAATAACACCATGGCTCGTGCCCTTTTCCTCATGGCCTTGGTTTCCACCATTGTGATTGTGGCACATGGACGCGGTCATCATAAAGGCGGGTATGGTCGTCACATGACTGCTCATAATGTAACTTACGATGGTAAGTCAATGTTCATCAACGGAAGGCGTGAGCTACTCTTTTCTGGTTCCATCCACTATACACGAAGCACACCAGATATGTGGCCTGTCCTTCTTGATAATGCAAGACGTGGAGGCATAAATGTCATCCAAACCTACGTGTTTTGGAATGCTCATGAGCCCATACAAGGACAGTTCAACTTTGAAGGTAATTACGACTTGGTGAAGTTTATTAAGCTTGTTCAAGAGCATGGAATGTTTGTCACTCTCAGGGTTGGACCCTTCATCCAAGCCGAGTGGAACCACGGAGGACTTCCATATTGGCTTAGAGAGGTTCCTAATATCATATTCCGCTCTGATAACGAGCCTTATAAGCAACACATGCAAGCATTCGTGACAAAGATTGTACAAATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTAGCTCAGATTGAGAATGAGTACAACCACATTCAACTTGCATACGAGGAGAAGGGAGTCAGTTATGTCCAATGGGCTGCAAACATGGCAGTAGCATTGGATGTTGGAGTTCCATGGGTCATGTGCAAGCAAAGAGATGCACCTGATCCAGTGATCAATGCTTGTAATGGAAGACATTGCGGTGATACATTCTCAGGACCAAACAAACCATACAAACCAGCCATATGGACAGAGAATTGGACTGCTCAGTACAGAGTACATGGAGATCCACCATCCCAAAGATCCGCAGAAGATATTGCATTTTCAATTGCTCGATTTTTCTCCAAGGGTGGAAATTTAGTCAACTACTATATGTACCACGGAGGAACAAACTTTGGTAGAACCAGTTCTGCTTTTACCACAACTCGTTATTATGATGAGGCCCCACTTGATGAATACGGTTTACAAAGAGAACCAAAATGGAGTCATTTAAGAGATGTTCATAAAGCTGTGCTCCTTTGCAGGAAGGCTATCCTTGGTGGCGATCCCAATGTAGAAAAGTTGAACGAATTTCATGAGATTAGAACCTTTGAGAAGCTTGGAACAAACCTGTGTGCTGCTTTCATAACCAACAACCACACAACAGATGCAGCCACTATTAACTTCAGGGGNACTAACTACTTTTTGCCTCCACATTCCATTAGTGTCCTCCCTGATTGCAAGACTTTAGTCTACAACACACAAAGTATTGTTTCACAACATAATTCGAGGAACTACGAGAGATCTCCAATTGCAAACAATTTCCAATGGGAGATGTTCAATGAGGCCATCCCAACAGCTAAAAAAATGGATATGTACCAAAAACTTCCGGCAGAGCTTTACAGTTTGCTCAAGGACACTACTGATTATGCTTGGTACACCACCAGCTTTGAGTTGGCTCCAGAAGACTTGCCAATAAAGCCTGGAGTTCTCCCAATTCTTCGTGTTATGAGTCTCGGACACACAATGGTTGCATTTGTAAATGGAGACCTCGTTGGAACTGCTCATGGAACTCATGAAGAAAAATCTTTTGATTTTCAACGACCAGTTCAACTAAGAGTTGGAACCAACTATATTTCCATCCTCGCTGGCACAGTTGGATTGCCTGANAGTGGAGCTTACATGGAACATAGATACGCAGGACCCAAGTCCATATCCATCATCGCTCTCAACACAGGAACACTTGATATCACTACCAATACGTGGGGTCATCGGGTTGGACTNAGGGGTGAAGGCATGAAAGTTTTCAGTGATGAAGGATCATTAAAGGCAAAATGGAANCCACTCAGTCCAATCCCACGCCCTCTCACCTGGTATAGGACAAGATTTGCCACTCCAGAGGGAACAGGTCCAGTTGCCATCAGGATGACTGGAATGGGCAAAGGAATGATGTGGATCAATGGTAATAGTATTGGTCGTCACTGGATGAGTTTCCTCTCCCCACTTGGAAAGCCCACACAATCAGAGTTCCACATCCCAAGATCTTTTCTTAACCCACAAGACAACTTGCTTGTTATATTTGAAGAGGAACCATTGGCTCCATTACAAGTTGAGATCTTGAACGTGAATAGAGACACAATTTGCAGTTTCATTGCAGAGAACGACCCTGCCAATGTGAATTCATGGGTGTCCAGAAGAGGAAATTTTCATCCTATTGTGCCATACATTGGACCCCAAGCCTCACTAATGTGCGCACCTGGGAAAAAGATTATGACTGTTGAGTTTGCCAGTTTTGGCAATCCAAGTGGTTATTGTGGAGAGTATATTTTAGGAACTTGTAATGCTGCTGCTACCAAGCAAATCGTGGAGCAAGAATGCTTAGGCAAAGAAACTTGCTCAGTTGCATTAAATCGTGCTTTATTCAACCAAAATGGTGTGGATCCATGCCCAGAAATATTGGTGAAAACCCTTGCAATCCAAGTGAGATGTTCTTAG 2532 0.4356 MEHTNNTMARALFLMALVSTIVIVAHGRGHHKGGYGRHMTAHNVTYDGKSMFINGRRELLFSGSIHYTRSTPDMWPVLLDNARRGGINVIQTYVFWNAHEPIQGQFNFEGNYDLVKFIKLVQEHGMFVTLRVGPFIQAEWNHGGLPYWLREVPNIIFRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGVSYVQWAANMAVALDVGVPWVMCKQRDAPDPVINACNGRHCGDTFSGPNKPYKPAIWTENWTAQYRVHGDPPSQRSAEDIAFSIARFFSKGGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEYGLQREPKWSHLRDVHKAVLLCRKAILGGDPNVEKLNEFHEIRTFEKLGTNLCAAFITNNHTTDAATINFRGTNYFLPPHSISVLPDCKTLVYNTQSIVSQHNSRNYERSPIANNFQWEMFNEAIPTAKKMDMYQKLPAELYSLLKDTTDYAWYTTSFELAPEDLPIKPGVLPILRVMSLGHTMVAFVNGDLVGTAHGTHEEKSFDFQRPVQLRVGTNYISILAGTVGLPXSGAYMEHRYAGPKSISIIALNTGTLDITTNTWGHRVGLRGEGMKVFSDEGSLKAKWXPLSPIPRPLTWYRTRFATPEGTGPVAIRMTGMGKGMMWINGNSIGRHWMSFLSPLGKPTQSEFHIPRSFLNPQDNLLVIFEEEPLAPLQVEILNVNRDTICSFIAENDPANVNSWVSRRGNFHPIVPYIGPQASLMCAPGKKIMTVEFASFGNPSGYCGEYILGTCNAAATKQIVEQECLGKETCSVALNRALFNQNGVDPCPEILVKTLAIQVRCS* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1858 843 Pfam Galactose binding lectin domain 761 842 IPR000922 GO:0030246
Vra5g1858 843 SUPERFAMILY (Trans)glycosidases 41 360 IPR017853 -
Vra5g1858 843 Gene3D - 392 577 - -
Vra5g1858 843 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 21 832 - -
Vra5g1858 843 Pfam Beta-sandwich domain in beta galactosidase 365 435 IPR041392 -
Vra5g1858 843 Gene3D - 612 729 - -
Vra5g1858 843 Pfam Glycosyl hydrolases family 35 50 356 IPR031330 -
Vra5g1858 843 Gene3D - 755 843 IPR043159 -
Vra5g1858 843 Gene3D Glycosidases 40 359 - -
Vra5g1858 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 189 201 IPR019801 GO:0004553|GO:0005975
Vra5g1858 843 ProSiteProfiles SUEL-type lectin domain profile. 753 843 IPR000922 GO:0030246
Vra5g1858 843 SUPERFAMILY Galactose-binding domain-like 598 747 IPR008979 -
Vra5g1858 843 SUPERFAMILY Galactose-binding domain-like 420 581 IPR008979 -
Vra5g1858 843 PANTHER BETA-GALACTOSIDASE RELATED 21 832 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 54 71 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 75 93 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 130 149 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 187 202 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 268 283 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 305 320 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 324 340 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 633 647 IPR001944 GO:0004553|GO:0005975
Vra5g1858 843 PRINTS Glycosyl hydrolase family 35 signature 660 676 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1858 Vra-Chr5 24410881 24415104 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1858 44 842 Glycoside Hydrolase AT2G16730 57.855 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1858 - - ccaj:109817195 1471.83