Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1855 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCTACCTCTCGTTCCGCCAAGCGCTCTCGTCTTTCTTCTTCCTCTTCTTCGATCCCGAACACCCCAACTGTTAATACACGTTCTCGTTCGGCCAGGACTAACACCACCACAACAAATTCCGTTTCTCTCATGGACCCCACTAACGAATCCTCCGGGTCAAGACGTGATCGCCGTGGCAAGAATTTGGAAAGGGACAATTCGGACAAAGGGAAGGAGAAAGAACAGGATGTTGGGATTAGGGACGTAGAAAGAGAGCGAGCCTTGGCGTTGAACATGGAGGGTGAAGGTGTTGGGGACGACGATGATAATTATAGTGACAGTGGTGTGCATCGGAATTTGACGTCTGCTAGTAGTGCCCTTCAAGGCCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTGCCACGGCTATGAGTGGTTCTGCGTCCTCTTCTCATCAGAGTGGTAGACTCAAGAAAATTCTGGCTGGATTGCGTGCTGACGGAGAAGAAGGTCGTCAGCTCGAGGCATTGTCGCAGCTTTGTGACATGCTTTCCATTGGAACTGAAGAATCCCTTAGTACATTTTCCGTTGACTCGTTTGTTCCTGTGTTAGTGGGGTTGCTTAATCATGAGAGCAACCCCGATGTTATGCTACTTGCGGCCAGGGCGCTTACCCATTTATGCGACGTTCTTCCCTCATCTAGTGCTGCTGTTGTGCATTACGGGGCAGTGTCTATATTCTGTGCTAGACTGCTTACGATAGAGTATATGGATTTGGCTGAGCAGTCTCTTCAAGCGCTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTACTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGAGTGGCATTGTCTACTGCTGCAAATATGTGCAAAAAGCTTCCTCCTGATGCAGCTGACTTTGTAATGGAAGCTGTTCCTCTTTTGACAAACCTTCTTCAGTACCATGACTCCAAGGTTCTGGAACATGCCTCTGTTTGCCTGACTCGAATAGCTGAAGCATTTGCCTCATCTCCAGACAAATTAGATGAATTATGCAATCATGGACTCGTAACACAAGCCGCCTCTCTCATTTCTAATAGCAGTTCCGGAGGTGGTCAGGCTTCTCTCAGCACTCCAACATATACCGGTCTGATCCGCCTTCTTTCCACATGTGCCAGTGGATCCCCTCTTGGAGCCAAAACATTGCTTCTCCTTGGAATTAGTGGCATTCTAAAAGATATACTATCCGGTTCTGGTGTTTCTTCTATCACCTCTTTTTCACCAGCATTAAGTAGGCCGGCAGATCAGATATTTGAGATTGTGAATCTGGCAAATGAACTTCTGCCTCCATTGCCACATGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTATTTTGTGAAAAAATGTCCTTCTGGCAGTTCCAGACAAGAAGACACCACCAACGGAAATGTTCATGAGATATCAGCTCGTGAGAAGTTATTAAATGATCAGCCTGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCCAGTGTCAATGGTCCTGTTCGCCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCGCATGTTTTGGTGCCTGCCTTGCAGATTGCAGAAATTCTTATGGAAAAGCTTCCTGGAACATTCTCTAAGATGTTTGTCAGAGAAGGTGTGGTCCATGCGGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATGTATCTATTCAAACATCTGCTGAGAAGGATAGTGATTCTGTATCTGGAACTCATTCTCAGCCCAAACACTATCGCCTGCGTAGTGGTAACTCAAACCCCGATGCAAACTATTTGGATGATTTGATGAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCAACAAGTTCCGTTGAAACTCCAACAACTGGTTCCAGTATTCGGGAGTCTATTAGCTCAGTTGCTAGAGGTTTTAAAGACAAGTACTTCCCTTCTGATCCTGGGTCTATTGAAGTGGGTGTTAGTGATGATCTTTTGCATTTGAAAAATCTCTGCACAAAGCTGAACACTTGTGTTGATGATCAAAAAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGACCTGGTCTCAACGAAAATTCTACTAACACAGAAGAATATTTAATTGGGGTGATATCTGACATGTTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGTTGAGTTATTTATCTTGTGGGTATTTTGCAAAAGATCGAATGTCAGAAACCAGTCTCCCCAGACTTCGTGAACAGGCACTTGCAAGGTTCAAGTCATTTGTTGATATTGCACTACCTTTGAGCATTGATAATGGGGATGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCATTGTCTTCCTTGGAACGCTTCCCTGTAATGCTGAGTAATTCTTCTCGTTCATCTAGTGGGAGTGCACGTCTCTCCAGTGGACTAAGTGCATTATCTCAGCCCATAAAGCTGCGTCTCTGTCGAGCACAGGGTGAAAAGTCACTTAAGGATTATTCTTCAAATGTGGTACTTATTGATCCATTAGCGAGTTTAGCAGCCATTGAGGAATTTCTGTGGACTCGTGTCCAGCGCAGTGAATCTGGTCAAAAGTCTACTGTACCTGGTGACAATTCTGAATCTGGAACAGCTCCTGCAGGGGCAGGTGTTTCATCTCCTTCCTCTTATACTGCCACCACTACCCGTAGACATGCAGCTATGTACAGATCATCTTTTACTATGGAAGATACACCTACAAAAAAAACATCTCAAGATAAAAGCACAAGTTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAGGCTGCACAGGAGGAAGCAAGAGGACCTCAGACCCGAAATCGCAGAAGAGCAGCTCTAGATAGAAATGCTCAAATGAAACCTGTAAATGGCGAATCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATAGATGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCATGAAGATGTGTTGAGGGATGATTCTCTTCCTGTCTGCTTGCCCGACAAAGTACATGATGTGAAATTGGGTGACTCAGCCGAGGAGAGTACTGTTGCTACAGCAACAAGCGATAGCCAGACTATCGCAGCCTCAGGTTCTAGCAGCAAAGCTGTGACAGCCAGGGGATCCGACTCTGCTGATTTTAGGAGTGGGTATTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTAGGATATGCTAATAGCAGAGGTTTCAGGGGTGGCAGAGATAGGCATGGCCGCCTGTTGTTTGGTACTTCTAATGATCCTCCAAAGTTAATTTTTACTGCTGCTGGGAAGCAGCTTAATAGGAATTTGACTATATACCAGGCAATTCAAAAACAGCTTGTGCTAGATGAAGATGACGATGACAGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAAGCAGTCTGTGGGGTGATATTTACACCATCACTTATCAAAGAGCAGAAAACCAGACAGATAAGGCATCTACTGGAGGATCAAGTTCAAATACTTCAAAACCTGCCAAATCTTGCTCTGCCTCAAATTCCAGCCCAGAAGCTAAGTTGCATCAGACTTCTGTTTTAGACAGTATATTGTATGGAGAATTGCCGTGTGATCTAGAGAAATCTAACCCCACCTACAATATTTTGGCACTCCTGCGTGTGTTGGAGTGTTTGAACCAGCTTGCTCCTCGTTTGAGGGCTCAAATGGTTTCTGATAGCTTTGCTGAGGGTAAAATCTCTAACTTTGATCAGCTAGTTGTTACAACTGATACTAGGGTTGTTCCGGAGGAATTCATTAGTGGTAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTAGCACTATGCAGTGGTAGTCTTCCTTTATGGTGTTATCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACTCGACGACAGTACTTCTATTCTACTGCATTTGGGTTATCTCGAGCACTGTATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCGACAACTGAGAGAGAGATTAGAGTTGGGAGATTACAGCGCCAAAAAGTTCGTGTCTCTCGAAACCGTGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCGGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTGGGCCCAACCCTGGAGTTTTATACAATTCTAAGTCATGATTTACAAAAGGTTGGACTGCAAATGTGGAGATCCCATTCTTCAAATAAACATGAAATGGAAGTTGACGGGGATGAAAAGAGAGAGCATAGTGTAGGCTCTGGGCCTGATTTGGCTGGAGATAAAGAACTTGTTCTAGCTCCTATGGGTTTGTTTCCTCGGCCATGGCCTACAAATTCTGATGCATCAGAGGGTAGTCCGTTTGCAAAAGTCATTGAGTATTTTCGGCTGCTCGGTCGTGTTATGGCGAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCATTGTCAGTGGCATTCTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGACATTCTGTTCATCGATGCTGAGCTTGGGAAGACTTTGCAAGAGTTAAAAGCCCTTGTTCGTCGGAAACATTATGTAGAATCTGTTGGTGGTAGCTGTACTGATACCCTTTTTGACTTACATTTTCATGATGCGCCAGTTGAAGATCTGTGCTTAGATTTTACACTTCCTGGTTTTCCTGAGTACACCTTGAAACCTGGAGATGAAACTGTCGATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCAACAGTCAAGACTGGAATCATGCGGCAAATAGAGGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGACTACTTGCTTTGTGGCCGGAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTTGACCATGGGTACAATGCAAAGAGCCCTCCAATTGTTAATTTACTTGAAATTATGGGGGAATTCACCCCGGAGCAGCAGCGCGCCTTCTGTCAATTTGTCACTGGTGCACCTAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATACTTCATCAAACGGGAATGGACCTTCAGAATCCGCGGACGATGACTTGCCTAGTGTGATGACATGCGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGGAAGTTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGGCAGGGATCCTTTGATTTATCATGA 5652 0.4432 METRSRKRAEASSAAPSSSSTSRSAKRSRLSSSSSSIPNTPTVNTRSRSARTNTTTTNSVSLMDPTNESSGSRRDRRGKNLERDNSDKGKEKEQDVGIRDVERERALALNMEGEGVGDDDDNYSDSGVHRNLTSASSALQGLLRKLGAGLDDLLPATAMSGSASSSHQSGRLKKILAGLRADGEEGRQLEALSQLCDMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSSAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSITSFSPALSRPADQIFEIVNLANELLPPLPHGTISLPVSSNLFVKGYFVKKCPSGSSRQEDTTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNVSIQTSAEKDSDSVSGTHSQPKHYRLRSGNSNPDANYLDDLMKSPVPVNVGLPTSSVETPTTGSSIRESISSVARGFKDKYFPSDPGSIEVGVSDDLLHLKNLCTKLNTCVDDQKTKAKGKVKASGPGLNENSTNTEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLSYLSCGYFAKDRMSETSLPRLREQALARFKSFVDIALPLSIDNGDVAPMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLKDYSSNVVLIDPLASLAAIEEFLWTRVQRSESGQKSTVPGDNSESGTAPAGAGVSSPSSYTATTTRRHAAMYRSSFTMEDTPTKKTSQDKSTSSSKSKGKAVLKAAQEEARGPQTRNRRRAALDRNAQMKPVNGESTSEDEELDISPVEIDEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVATATSDSQTIAASGSSSKAVTARGSDSADFRSGYSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGRLLFGTSNDPPKLIFTAAGKQLNRNLTIYQAIQKQLVLDEDDDDRFAGSDYVSSDGSSLWGDIYTITYQRAENQTDKASTGGSSSNTSKPAKSCSASNSSPEAKLHQTSVLDSILYGELPCDLEKSNPTYNILALLRVLECLNQLAPRLRAQMVSDSFAEGKISNFDQLVVTTDTRVVPEEFISGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREIRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSHSSNKHEMEVDGDEKREHSVGSGPDLAGDKELVLAPMGLFPRPWPTNSDASEGSPFAKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILFIDAELGKTLQELKALVRRKHYVESVGGSCTDTLFDLHFHDAPVEDLCLDFTLPGFPEYTLKPGDETVDINNLEEYISLVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYNAKSPPIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEVMYKKLLYAISEGQGSFDLS* 1884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1855 1883 MobiDBLite consensus disorder prediction 1034 1048 - -
Vra5g1855 1883 SUPERFAMILY Hect, E3 ligase catalytic domain 1453 1876 IPR035983 GO:0004842
Vra5g1855 1883 Gene3D Hect, E3 ligase catalytic domain 1754 1881 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 953 1070 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 1136 1158 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 953 1023 - -
Vra5g1855 1883 ProSiteProfiles HECT domain profile. 1583 1883 IPR000569 GO:0004842
Vra5g1855 1883 SMART arm_5 203 244 IPR000225 GO:0005515
Vra5g1855 1883 SMART arm_5 329 367 IPR000225 GO:0005515
Vra5g1855 1883 SMART arm_5 286 326 IPR000225 GO:0005515
Vra5g1855 1883 MobiDBLite consensus disorder prediction 1 102 - -
Vra5g1855 1883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 43 1883 IPR045322 GO:0006511|GO:0061630
Vra5g1855 1883 SUPERFAMILY ARM repeat 171 651 IPR016024 -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 10 68 - -
Vra5g1855 1883 SMART hect_3 1471 1883 IPR000569 GO:0004842
Vra5g1855 1883 Pfam HECT-domain (ubiquitin-transferase) 1509 1883 IPR000569 GO:0004842
Vra5g1855 1883 CDD HECTc 1460 1878 IPR000569 GO:0004842
Vra5g1855 1883 Gene3D Hect, E3 ligase catalytic domains 1401 1644 - -
Vra5g1855 1883 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 43 1883 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 1265 1292 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 69 102 - -
Vra5g1855 1883 MobiDBLite consensus disorder prediction 648 680 - -
Vra5g1855 1883 Gene3D - 161 479 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1855 Vra-Chr5 24388241 24398284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1855 K10590 - gmx:100791450 3035.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1855 5 24388241 24398284 Vra5g1855 5 24388241 24398284 ECH