Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1854 ATGGGTTTCTTCGGCACCATATTTAGTTTTTTTGGCTTTGGATTTGGGATTTCCATGGGTCTTGCTATCGGTTATTATCTCTTTATTTATGTTCAACCCAGTGATGTGAAGGATCCTGAAATTAAACCATTGGCAGAGGAAGATTCAGAAACTATAGACCGAATGATTCCTGAAATTCCACTTTGGGTAAAGAATCCAGACTTCGATCGGGTTGATTGGCTTAACAAACTGATTGAATATATGTGGCCATATCTAAATAAGGCTATCTGCAAAACAGCAGAGACCATTGCAAAGCCTATAATTGAAGAGCAAATACCACAATATAAAATTGATTCCGTTGAATTCGAAGAACTAACACTAGGTTCCTTGCCGCCAACTTTTCAAGGAATGAAAGTTTACGAGACTGAAGAGAAAGAATTAATCATGGAGCTTTCTGTAAAATGGGCAGCAAATCCTAATATCATTGTTGCAGTTAAGAAATTTGGGTTGAAAGCAACGGTCCAGGTGATGGATCTGCATGTTTTTGCTATACCGCGTATTACTTTGAAACCTTTGGTTCCAAGTTTTCCATGCTTTGCCAATATTTTCGTGTCTCTCATGGAAAAGCCATATGTTGACTTTGGGCTGAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGACTTTACAAGTTCGTTCAGGAGATTATCAAAGATCAAGTTGCAAATATGTATCTATGGCCGAAAACTTTAGATATTCAAGTTATAGATCCATCGAAAGCACAGAAGAAGCCTGTTGGAATTTTAAATACAAAGGTTATAAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTGGGTGCATCTGACCCTTATGTGCAGTTAACAATTACCGAAGACACTTTGACATCGAAAAAAACTACTGTAAAGCATAAGAACTTGAATCCTGAATGGAACGAAGAATTTAGTTTGGTTGTTAAAGATCCTGAGACTCAAGCTTTAGAGTTTCAAGTTTTTGACTGGGAACAGGTTGGGAAGCATGACAAGATGGGTATGAATATGATTCCTTTGAAAGAACTCACAGCTGATGAACCTAAAACTTTTACTCTTGAACTTTTGAAAAACTTGAATCCAAAGGATCCCCAGAATGAGAAGTCTCGGGGTCAAATTGTCCTAGAATTGACATATAAACCATTTAGGAACGAAGACTTGGCGAAAAGTTTTAAGGAGCCACATCCTACAAAGAGTCCTCCCGAAGGCACTCCTCCTGGTGGAGGTTTACTTGTAGTTATAATCCATGAAGCTCAAGATGTTGAGGGAAAGTACCATACCAATCCACACGTACGCCTTATTTTCAGAGGAGAAGAGAGAAGAACTAAGATAATTAAAAAGAATAGAGATCCAAGATGGGAAGAAGAGTTCCAATTTTTGGTGGAAGAGGCTCCCACAAATGATAAATTACATGTGGAAGTTGTTAGCACTTCCTCACGAAGCCTTCTACGTCAAAAGGAATCTTTGGGTTATGCTGACATTAGTCTTGCGGATGTTGTTGCGAATAATAGAATCAACGAAAGGCACCATCTTATAGACTCCAAGAATGGTCGTATCCAAATAGAACTACAGTGGAGAGCTTCACAAGCTAATTAA 1623 0.3839 MGFFGTIFSFFGFGFGISMGLAIGYYLFIYVQPSDVKDPEIKPLAEEDSETIDRMIPEIPLWVKNPDFDRVDWLNKLIEYMWPYLNKAICKTAETIAKPIIEEQIPQYKIDSVEFEELTLGSLPPTFQGMKVYETEEKELIMELSVKWAANPNIIVAVKKFGLKATVQVMDLHVFAIPRITLKPLVPSFPCFANIFVSLMEKPYVDFGLKLVGADLMSIPGLYKFVQEIIKDQVANMYLWPKTLDIQVIDPSKAQKKPVGILNTKVIRAMKLKKKDLLGASDPYVQLTITEDTLTSKKTTVKHKNLNPEWNEEFSLVVKDPETQALEFQVFDWEQVGKHDKMGMNMIPLKELTADEPKTFTLELLKNLNPKDPQNEKSRGQIVLELTYKPFRNEDLAKSFKEPHPTKSPPEGTPPGGGLLVVIIHEAQDVEGKYHTNPHVRLIFRGEERRTKIIKKNRDPRWEEEFQFLVEEAPTNDKLHVEVVSTSSRSLLRQKESLGYADISLADVVANNRINERHHLIDSKNGRIQIELQWRASQAN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1854 540 SMART C2_3c 419 517 IPR000008 -
Vra5g1854 540 SMART C2_3c 261 361 IPR000008 -
Vra5g1854 540 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Vra5g1854 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 392 IPR035892 -
Vra5g1854 540 Pfam C2 domain 260 362 IPR000008 -
Vra5g1854 540 Pfam C2 domain 419 517 IPR000008 -
Vra5g1854 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Vra5g1854 540 Gene3D C2 domain 419 538 IPR035892 -
Vra5g1854 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Vra5g1854 540 PRINTS C2 domain signature 277 289 IPR000008 -
Vra5g1854 540 PRINTS C2 domain signature 304 317 IPR000008 -
Vra5g1854 540 PRINTS C2 domain signature 326 334 IPR000008 -
Vra5g1854 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Vra5g1854 540 Gene3D C2 domain 247 390 IPR035892 -
Vra5g1854 540 CDD C2 420 521 - -
Vra5g1854 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Vra5g1854 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Vra5g1854 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1854 Vra-Chr5 24381974 24386981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1854 262 505 Lipid Metabolism Gene Families AT1G51570 25.843 1.87e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1854 - - gmx:100780850 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1854 5 24381974 24386981 Vra5g1854 5 24381974 24386981 ECH