Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1847 ATGCTACTCAATCTAAGTACAACCTATCTCTTTGTCGTCTATCCTTTCTTACAATCCCGTGTTCTCTGCGACACAGTACTCCCATTTCTTTTGTATTTAAGCTCGCTTCTTTTCTTCACATTTCATAACCCTTTCTCTTCTCCCTTCTCATTGATGACTCCAAGGATGCAACAAGATATCCCCTCCTATGTCCTTATACTTTTCTTCCTTCTGATACCAACTTCTCTGGTTTCTCCTTTATATGATGGGCCCCTATATGACTTCACTGCCTACACTGAGTGCAAAGAGAAGCCAGAGGAGCCACTTTATGGAGGAGGAGTTCTCAAGAGTGAGCAACAGTCTCCTCCTGCTGTTCAGGACAACATAGTTTCATCTTACGTTGTTAATAACATCTACGTGCCATCACTCGTTCTCCATAATCTCACTCAGGGCACCCTTTACACCTTTTCCGCATGGGTGAGAGTTAAAGGTTCAAGTTCAGCTATGATAAGGGCTACTCTGGAAACAGAGAAAGAGACGTATGATTGCATAGGAACAGTTTCAGCCAAGCTTGGATGCTGGTCTTTTCTGAAGGGTGGTTTTGTTCTCAACTGGTCTTCAAATTTATCCATTATCTTCTTCCAGAACGCGGATGGTAAAGACATCAATATAGAAGTTGCTAGCCCGTCACTCCAGCCATTTTCTAAGCAACAATGGGAAATCAATCAACAGTATATGATCAATACTAAAAGAAAGCGTGCCGTCACTATTCATGTATCTGATAACAACGGTAGAAGATTGCAAGGAGCTTCCATCTGTATAGAGCAAATCTCAAAAGAATTCCTTTTTGGATCTGCCATAGCACACACTATTCTTGGCAACGTACCCTATCAGAATTGGTTTGTGAAACGATTCAACGCGGCAGTCTTTGAAAATGAGCTCAAATGGTACGCCACAGAACCTGATGAAGGCAAGGTCAATTACACCATTTCAGACCAAATGCTACAATTTGTTCGAACAAAAAATATCGTAGCCAGAGGGCACAACATATTTTGGGAAGACCCTAAGTACAATCCTCCATGGGTTCTTAACCTTACTGGCCCCCAGTTACAGTCTGCAGTGAATTCCCGAATACAAAGTCTGATGAGCCAGTACAGAAATGAGTTCATACACTGGGACGTCAGCAACGAAATGCTTCATTTTGATTTCTACGAGCAAAGGCTTGGATCTGATGCAACATTGCATTTCTTTGAGACTGCACACGAATCAGACCCATTATCAACCCTGTTTATGAATGACTTTAATGTTGTGGAAACATGCAGTGATGTAAATTCCACCGTAGACGCCTATATCTCACGGATAAGAGAACTGCGACGAAATGGCATCTTCATGGATGGAATTGGCTTGGAGGGACACTTCACAATACCAAATCCTCCCCTTATCAGAGCCATACTAGACAAGCTGGCAACACTTGGACTTCCCATTTGGCTTACTGAGGTTGATATAAGCAAGACTATTGATACAGATTCACAGGGAGATTATTTGGAGCAAGTGTTGAGGGAAGGGTTCTCACATCCTTCTGTGAATGGGATAATGCTTTGGACAGCATATCATCCAAACGGGTGCTACCAAATGTGCCTGACAGACAAAAATTTCAAGAACCTGGCAGCAGGTGATGTGGTGGACAAACTTCTTCAAGAATGGAAAACAGGTCGTGTAGAGGGAGTGACAGATGTGCACGGTTCCTATAGCTTTCATGGCTTCTTAGGAGAATATACTGTTACTGTCAACTATGGCAACAGGACTACGCATTCAACATTCTCCCTCTCTCGAGGTCAAGAAACTGAACATTTCACCATTACACTCTCATCCAACTCTTAG 1860 0.4263 MLLNLSTTYLFVVYPFLQSRVLCDTVLPFLLYLSSLLFFTFHNPFSSPFSLMTPRMQQDIPSYVLILFFLLIPTSLVSPLYDGPLYDFTAYTECKEKPEEPLYGGGVLKSEQQSPPAVQDNIVSSYVVNNIYVPSLVLHNLTQGTLYTFSAWVRVKGSSSAMIRATLETEKETYDCIGTVSAKLGCWSFLKGGFVLNWSSNLSIIFFQNADGKDINIEVASPSLQPFSKQQWEINQQYMINTKRKRAVTIHVSDNNGRRLQGASICIEQISKEFLFGSAIAHTILGNVPYQNWFVKRFNAAVFENELKWYATEPDEGKVNYTISDQMLQFVRTKNIVARGHNIFWEDPKYNPPWVLNLTGPQLQSAVNSRIQSLMSQYRNEFIHWDVSNEMLHFDFYEQRLGSDATLHFFETAHESDPLSTLFMNDFNVVETCSDVNSTVDAYISRIRELRRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTIDTDSQGDYLEQVLREGFSHPSVNGIMLWTAYHPNGCYQMCLTDKNFKNLAAGDVVDKLLQEWKTGRVEGVTDVHGSYSFHGFLGEYTVTVNYGNRTTHSTFSLSRGQETEHFTITLSSNS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1847 619 SUPERFAMILY (Trans)glycosidases 260 565 IPR017853 -
Vra5g1847 619 SUPERFAMILY Galactose-binding domain-like 139 217 IPR008979 -
Vra5g1847 619 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 261 557 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 Gene3D Glycosidases 265 571 - -
Vra5g1847 619 SMART glyco_10 307 558 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 64 614 - -
Vra5g1847 619 PANTHER GLYCOSYL HYDROLASE 64 614 IPR044846 GO:0004553|GO:0005975
Vra5g1847 619 Gene3D - 125 220 - -
Vra5g1847 619 PRINTS Glycosyl hydrolase family 10 signature 338 350 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 PRINTS Glycosyl hydrolase family 10 signature 382 393 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 PRINTS Glycosyl hydrolase family 10 signature 420 431 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 PRINTS Glycosyl hydrolase family 10 signature 453 465 IPR001000 GO:0004553|GO:0005975
Vra5g1847 619 Pfam Glycosyl hydrolase family 10 270 529 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1847 Vra-Chr5 24344687 24347649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1847 82 615 Glycoside Hydrolase AT4G38650 64.126 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1847 - - vra:106762624 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1847 5 24344687 24347649 Vra5g1847 5 24344687 24347649 ECH