Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1846 ATGGAATCAGAAGAAGCTATAGTAGCCATGGTGCCAAGCCCAGGTATGGGACATTTGATGCCAATGATTCAGTTCGCTGAGAGACTCTGCCGTCACCACAACCTCCGCATCACTTTCTTAATACCCACCAACGCTCCTCCTTCTCATGCCCAGACCACCATCCTCACCTCCCTCCCACCTCTCATCTCCCACGTCTTCCTTCCAACTGTCACACTCACTGACATTCCACCCAACGCCAAAATGGAGACTATAATCTCTGTTTCAATCCTGCGCTCTCTCCCTTATCTCCGCCACGCCCTCCTCTCTCTCTCCGCCACCCACCGCGTCACAGCTCTACTCCTCGACTTCTTCGGTACCGACGCCTTCGACCTCGCCAGAGAACTAAACGTGTCCCCTTACGTCCTCTTTCCTTCCACCGCCATGCTTTTGTCTTTGGCCTTGAACGTCCCTCGCCTGGACCAAGACGCTCACTTCTGGGACTTCTCCAAGCCTGTCCACCTCCCCGGCTGCCTTCCAGTTCATCGAAAGGACTTGGGGCTTGCGTTTGAGGACCGGGATGACGATGCCTACAAATGGATTCTCCACCACGGCAAACGCTACATGCTAGCAGAAGGGTTCGTAGAGAATAGCTTCCGTGATCTTGAACCGGAAACCATAGACTTGCTGCGGAAGGACGAACCTGGTAGGCCACCGGTTTATCTGGTTGGACCGCTGGTAAAAGAGGATGATGCCGGAAGCGAAGTGAACATGGTCGAACAGTGTTTGTGTTTGAAGTGGTTGGATGCGCAGCCACATGGCAGTGTGATATTGGTGTGTTTTGGTAGCGGTGGTACCCTGTCCAGAGATCAGATGGAGGAGCTTGCTTTGGGGTTGGAGATGAGTGAGCAGAGGTTTGTGTGGGTGGTGAAGTCCCCCAACGAGGAAGTTGCTAATGCTTCTTATTTCACTGAGGATACCGGTGTCCACCTTTTTGATTTCCTGCCACAGGGATTTGTGGAGAGAAGCAAAGGAAGAGGCTTGGTGGTACCGTCTTGGATCCCACAGGCCCAGGTGCTGAGCCACCCCTCCATCGGAGGGTTTGTGACGCACTGTGGTTGGAACTCGATTCTCGAGAGTGTGGTGAATGGGGTGCCCTTGGTGGCTTGGCCACTCTACGCTGAGCAGAGTATGAATGCCGTTTTGGTAAGTGAAGGCATGAAAGTGGCAGTGAGAGTGGTGATTGGTGAGAATGGGTTGGCGGAAAGAGGAGAAATTGCGAGGGTAGTGAAGATGGTGATGGAAGGTGAGGAAGGGAAGAAGCTACTTCACCGAATGAAGCAGCTGAAGGAGGCCGCCGCCACAGCTCTGAGGGACGGTGGCTCTTCGTCAACCCAAATTTCTGAATTGGCTCTCAAGTGGAAAGCCCAAACAAAAGTGTATTAA 1422 0.5309 MESEEAIVAMVPSPGMGHLMPMIQFAERLCRHHNLRITFLIPTNAPPSHAQTTILTSLPPLISHVFLPTVTLTDIPPNAKMETIISVSILRSLPYLRHALLSLSATHRVTALLLDFFGTDAFDLARELNVSPYVLFPSTAMLLSLALNVPRLDQDAHFWDFSKPVHLPGCLPVHRKDLGLAFEDRDDDAYKWILHHGKRYMLAEGFVENSFRDLEPETIDLLRKDEPGRPPVYLVGPLVKEDDAGSEVNMVEQCLCLKWLDAQPHGSVILVCFGSGGTLSRDQMEELALGLEMSEQRFVWVVKSPNEEVANASYFTEDTGVHLFDFLPQGFVERSKGRGLVVPSWIPQAQVLSHPSIGGFVTHCGWNSILESVVNGVPLVAWPLYAEQSMNAVLVSEGMKVAVRVVIGENGLAERGEIARVVKMVMEGEEGKKLLHRMKQLKEAAATALRDGGSSSTQISELALKWKAQTKVY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1846 473 ProSitePatterns UDP-glycosyltransferases signature. 345 388 IPR035595 -
Vra5g1846 473 Gene3D Glycogen Phosphorylase B; 8 456 - -
Vra5g1846 473 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 4 470 - -
Vra5g1846 473 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 259 433 IPR002213 GO:0008194
Vra5g1846 473 CDD GT1_Gtf-like 8 448 IPR002213 GO:0008194
Vra5g1846 473 PANTHER GLYCOSYLTRANSFERASE 4 470 - -
Vra5g1846 473 Gene3D Glycogen Phosphorylase B; 251 450 - -
Vra5g1846 473 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 7 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1846 Vra-Chr5 24341844 24343433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1846 8 471 Glycosyltransferase AT1G01420 51.178 9.95e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1846 K08237 - gmx:100101895 557.37