Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1841 ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAAATGGCGGACCAGGTATCGAAGATGGCGGAGGAGGCCCAGAATTTCCGACAGGAATGTCTCGAGCTCAAATCCAAAACGGAGAAGCTCGCAGGGCTCCTCCGCCAGGCCGCGAGGAACAGCAGCGACCTATACGAGCGTCCCACGCGGCGCATCATCGACGACACCGAACAAGTCCTGGACAAGGCCCTCATACTCGTCACCAAATGCCGCGCCAACAGTGTCATCAAAAGACTCTTCACCATCATCCCCGCCACAGCCTTCCGCAAGACCTCCATGCAGCTAGAGAATTCCGTGGGCGATGTCCAGTGGCTCCTCCGCGTCTCTGCCTCCGCCGACGAGCGTGACGACGAGTACCTCGGGCTTCCCCCCATCGCTGCCAACGAACCCATCCTCTGCCTCATCTGGGAACAGGTTGCCATTCTCTTGTCCGGTGCCCCCTTGGAAGATCGCAACGACGCCGCCGCTTCATTGGTTTCGCTCGCTCGCGACAATGACCGTTACGGGAAACTGATCATCGAAGAGGGTGGCGTGCCCCCGCTGTTGAAGCTTCTGAAGGAAGGACACTTGGAAGGACAGGAGAACGCTGCGAGAGCCATTGGGCTTCTCGGGAAAGACCCTGAAAGTGTGGAACACATTGTGAACGCCGGTGTTTGTTCAGTGTTTGCCAAAATCCTCAAAGATGGTCACATGAAGGTTCAAGCGGTGGTGGCCTGGGCTATTTCTGAACTCGCTGCCAATCACCCCAAATGCCAGGATCATTTTTCTCAGAACAATGCCATACGCTTGCTCGTTAGCCATCTCGCCTTCGAGACCATTCAAGAGCATAGCAAGTACGCTATTGCCAACAAGGCCAGGTCCATTCACACCTTAGTTTTGGAGAGTAATACAACCAACACGCATGAATATGAAGATGATAAGAACGTTGCCCTTCGTCCAACGGGGACAAATACATCCACTCAGATGCACAACGTGGTTTCGAACACCATGGCAATGAAGGGCATTGCCCAAAAAAATAATGCCACTGCCACGGCTGGGACACCGCATAACAGCGGCGTTACAAACGCGAAAAAACATCAAGGTGGGACACCGCACGTGTCAATTGCTGGGACGAGTATCAAGGGGAGGGAATACGAAGACCCCGTCACAAAGGCAGAGATGAAGGCGATGGCAGCCAGAGCCTTATGGCAACTGGCGAGGGGTAACTTGAGTGTGTGTAGGAGCATAACAGAATCAAGGGCTCTTCTGTGTTTCGCAGTTTTGCTGGAAAAGGGTCCCGAAGACGTGCAATCTTACTCTGCGATGGCGTTAATGGAAATAACGGCCGTGTCGGAGCAACATGCAGAGCTGAGACGCTCTGCATTCAAACCCACAGCCCCTGCTGCAAAGGCTGTTCTTGATCAGCTTCTTAGAGTGATAGAAAACGAACAAGATGACCTGCTCATACCTTGCATAAGATCCGTTGGTAATTTGGCGAGAACTTTCAGAGCCACGGAAACAAGACTGGTTGGGCCATTGGTGAAACTCCTTGACGAAAGAGAAGCCCATGTTAGCACGGAAGCGGCAATTGCACTCAACAAATTTGCATGCACGGAAAACTACCTCCACGAGAACCACTGCAACGCCATCATAGAGGCTGGGGGCGCCAAGCACTTGATTCAACTGGTTTACTTTGGGGAGCAAATGGTTCAGATTCCTTCCGTGACTCTCCTTTGTTACATAGCGCTCCACGTCCCCAAGAGCGAGACACTGGCGCAAGAAGAGGTTCTCATAGTTCTGGAGTGGTGCACCAAGCAGGCACATCTCGTGGAGGAACACAGCATCTTACAACTGCTACCAGAAGCTAAGAGTAGACTCGAACTCTATCAATCAAGAGGAAGAGGATTCCGTTGA 1932 0.528 MSSIVKEILASPIQMADQVSKMAEEAQNFRQECLELKSKTEKLAGLLRQAARNSSDLYERPTRRIIDDTEQVLDKALILVTKCRANSVIKRLFTIIPATAFRKTSMQLENSVGDVQWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQVAILLSGAPLEDRNDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLLKEGHLEGQENAARAIGLLGKDPESVEHIVNAGVCSVFAKILKDGHMKVQAVVAWAISELAANHPKCQDHFSQNNAIRLLVSHLAFETIQEHSKYAIANKARSIHTLVLESNTTNTHEYEDDKNVALRPTGTNTSTQMHNVVSNTMAMKGIAQKNNATATAGTPHNSGVTNAKKHQGGTPHVSIAGTSIKGREYEDPVTKAEMKAMAARALWQLARGNLSVCRSITESRALLCFAVLLEKGPEDVQSYSAMALMEITAVSEQHAELRRSAFKPTAPAAKAVLDQLLRVIENEQDDLLIPCIRSVGNLARTFRATETRLVGPLVKLLDEREAHVSTEAAIALNKFACTENYLHENHCNAIIEAGGAKHLIQLVYFGEQMVQIPSVTLLCYIALHVPKSETLAQEEVLIVLEWCTKQAHLVEEHSILQLLPEAKSRLELYQSRGRGFR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1841 643 SUPERFAMILY ARM repeat 156 608 IPR016024 -
Vra5g1841 643 Coils Coil 19 39 - -
Vra5g1841 643 Gene3D - 150 314 IPR011989 -
Vra5g1841 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Vra5g1841 643 PANTHER ARMADILLO REPEAT ONLY 1 1 642 - -
Vra5g1841 643 Gene3D - 468 625 IPR011989 -
Vra5g1841 643 Gene3D - 390 467 IPR011989 -
Vra5g1841 643 SMART arm_5 219 259 IPR000225 GO:0005515
Vra5g1841 643 SMART arm_5 177 218 IPR000225 GO:0005515
Vra5g1841 643 SMART arm_5 415 455 IPR000225 GO:0005515
Vra5g1841 643 SMART arm_5 549 589 IPR000225 GO:0005515
Vra5g1841 643 Gene3D - 3 121 IPR036537 GO:0007166
Vra5g1841 643 Pfam Armadillo/beta-catenin-like repeat 219 259 IPR000225 GO:0005515
Vra5g1841 643 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Vra5g1841 643 PANTHER ARMADILLO REPEAT ONLY 4 1 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1841 Vra-Chr5 24304983 24307426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1841 - - vun:114164601 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1841 5 24304983 24307426 Vra5g1841 5 24304983 24307426 ECH