Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1827 ATGGCGAGTAAGTCAGGGAGCAGCAAGCGGAAAAATGGTGCCAAGGGAGAGATTGTGGATGGTTCAAAGATTATGGAGTTGGTTGGAAATGAACAAGTTTTCAGCAACTTTGTGGATAATAAGTTTGACGAGTTGGATAAGGACAGAGATGGGAAACTCTCCATGAAGGAGCTTGAACCTGCTGTTGCTGACATCGGTGCTGGCCTTGGTTTGCCTGCTCAAGGCACTAGTCCTGATTCAGATCACATCTATTATGAGGTCTTGAATGAGTTCACCCATGGCAAGCAAGAAAAAGTAAGCAAGATGGAGTTCAAAGAAGTTCTCTCAGACATTCTTTTGGGCATGGCTGCTGGACTAAAGCGAGACCCTATTGTTATACTCCGCATGCAAGGAGAAGATCTACTTGAGTTTGTGAATGGTCCAAGTTATGAAGCAGAAATGGCATCCATTTTCTCTCAGATTGAGTCCCCTAGTGGATCACTTCGTGACCATGTAATTGAAGCTTTTGGGAGACTCACTGTTGATCATGGAATTCCTCCCACGTCAGATTCGTGGGTAGATGCTGCAACTACTCTGTCCTTGAATGTTTTCAACAACATTGTGGATCCAGCACTGTCTCAAGCTGGGCCTGCTTTGGACAAACCTGCTTCTCAGGAGAAATTTTTGGAAGAATTTAAGAGAGTGGCACTCAGTGTGGCTGATTTTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGCGAAAACACATTCGATGGACGAGGCGTTAAGAAACTTTTATCCAACAAGTTTGAACTAGAAAGGACATTGAACTTGGCTTTAGAGAATCTGTCAAAAGATCGCAATGGAAAAATATCAAAGGACAATCTGCGGGTGGCACTAGATCTGGTGTCTCCATCTGCTGGTTTGCCTCCAGTTGGTGCAATTGAAGAGATGGATAAAGTTATCATTGAAGCCTTTAAGATGGTGAATGCCGATGACAGAAACACGGTTACAGAAGAAGAATTCAAGAAAAGTTTAACTGAAATATTGGGGGGTATCATGTTGCAGTTAGAGGGCAATCCCATATCTGTTTCTTCAAACTCAGTCGTGCATGAGCCTTTAGGCTCATCTTCTACACTCTTGCAGCCATCTTCTAGTGAGACAGCATAG 1149 0.4352 MASKSGSSKRKNGAKGEIVDGSKIMELVGNEQVFSNFVDNKFDELDKDRDGKLSMKELEPAVADIGAGLGLPAQGTSPDSDHIYYEVLNEFTHGKQEKVSKMEFKEVLSDILLGMAAGLKRDPIVILRMQGEDLLEFVNGPSYEAEMASIFSQIESPSGSLRDHVIEAFGRLTVDHGIPPTSDSWVDAATTLSLNVFNNIVDPALSQAGPALDKPASQEKFLEEFKRVALSVADFLKEKPVIVAHSENTFDGRGVKKLLSNKFELERTLNLALENLSKDRNGKISKDNLRVALDLVSPSAGLPPVGAIEEMDKVIIEAFKMVNADDRNTVTEEEFKKSLTEILGGIMLQLEGNPISVSSNSVVHEPLGSSSTLLQPSSSETA* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1827 382 ProSiteProfiles EF-hand calcium-binding domain profile. 264 299 IPR002048 GO:0005509
Vra5g1827 382 Gene3D - 11 119 - -
Vra5g1827 382 Gene3D - 155 349 - -
Vra5g1827 382 ProSitePatterns EF-hand calcium-binding domain. 46 58 IPR018247 -
Vra5g1827 382 ProSiteProfiles EF-hand calcium-binding domain profile. 33 68 IPR002048 GO:0005509
Vra5g1827 382 SMART efh_1 314 342 IPR002048 GO:0005509
Vra5g1827 382 SMART efh_1 37 65 IPR002048 GO:0005509
Vra5g1827 382 SMART efh_1 268 296 IPR002048 GO:0005509
Vra5g1827 382 SUPERFAMILY EF-hand 41 352 IPR011992 -
Vra5g1827 382 ProSiteProfiles EF-hand calcium-binding domain profile. 310 345 IPR002048 GO:0005509
Vra5g1827 382 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 2 381 - -
Vra5g1827 382 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 2 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1827 Vra-Chr5 24228353 24232225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1827 15 381 EF-hand Containing Proteins AT4G38810 64.674 4.50e-168 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1827 - - vra:106761135 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1827 5 24228353 24232225 Vra5g1827 5 24228353 24232225 ECH