Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1817 ATGTTTCACCCCGCAGTGGTTGCATCATGTCCCTGTCCGAATCCTTATCCTTGGCGCCATCACTTCCCCGGCGCAAGCGCAGGTACAGTGACGGTGAGGGTGACCCCAATGCAAGTTGTGACAGGGAAGGCGGTGGTTGGTTCCAGAATAAGGTGCATGGCCAATCCTAGAAGAGTCCAAATGGTGGCCAAGCAAATAAGGAGAGAGCTCTCTGATATGCTCCTCACCGACAAAGTGTTGCAGTATGCTATTCTTCCCGAAACTTCCTTAGGAGCCGACCGTTACCTATCTTCCCTCACCACCGTCACCGATGTCCAAGTCTCCGGTGATCTCCAGGTGGTTAAGGTTTTTGTCTCTGTTTTTGGGGATGAAAGAGGGAGAGAAGTAGCCATTGCCGGCTTGAAGTCAAAGGCCAAATATGTTCGCAGTGAATTGGGGAAGCGTATGAAGTTGCGCTTAACTCCTGAGATACGCTTTATTGAGGATGATTCTTTTGAGAAAGGAAGCAGGGTGATTGCAATATTAGATAAAATAAAGAATGAGAAGAGTTCTGGGAGTCAAAACAAGGAGCGGTTAAATTCATCAACAAATGAGGATGATGATGAATGGGATGGGGAAGATCCTGAAGAAGGTGTCATTTATGTGGAATAG 651 0.4747 MFHPAVVASCPCPNPYPWRHHFPGASAGTVTVRVTPMQVVTGKAVVGSRIRCMANPRRVQMVAKQIRRELSDMLLTDKVLQYAILPETSLGADRYLSSLTTVTDVQVSGDLQVVKVFVSVFGDERGREVAIAGLKSKAKYVRSELGKRMKLRLTPEIRFIEDDSFEKGSRVIAILDKIKNEKSSGSQNKERLNSSTNEDDDEWDGEDPEEGVIYVE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1817 216 TIGRFAM rbfA: ribosome-binding factor A 53 180 IPR000238 GO:0006364
Vra5g1817 216 Pfam Ribosome-binding factor A 58 174 IPR000238 GO:0006364
Vra5g1817 216 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 43 216 IPR000238 GO:0006364
Vra5g1817 216 SUPERFAMILY Ribosome-binding factor A, RbfA 53 178 IPR023799 -
Vra5g1817 216 MobiDBLite consensus disorder prediction 199 216 - -
Vra5g1817 216 ProSitePatterns Ribosome-binding factor A signature. 141 162 IPR020053 GO:0006364
Vra5g1817 216 MobiDBLite consensus disorder prediction 181 216 - -
Vra5g1817 216 Hamap Ribosome-binding factor A [rbfA]. 57 175 IPR000238 GO:0006364
Vra5g1817 216 Gene3D - 53 169 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1817 Vra-Chr5 24168938 24171449 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1817 K02834 - gmx:100812407 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1817 5 24168938 24171449 Vra5g1817 5 24168938 24171449 ECH