Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1813 ATGCCTGCCTTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGGTCGCCTTTACCGACGTTCCTCTGCCTACGACAGACGACAACACCAGCCATTGGTCACCGTCCCTCTCCGCCGCTCTCTACAACGTCGACGGATGGGGCGGTCCCTACTTTTCCGTCAACGCAGCCGGGAACATCTCGGTGCGCTCCCACGGGTCCGCCACCCTGTCGCACCAGGAGATCGATTTGCTGAAGATTGTGAAGAAGGCCTCCGATCCCAAATCTGTAGGGGGCCTTGGCCTTCAGTTTCCCCTCATTGTCCGTTTCCCGGACGTTCTCAAGAACCGCTTGGAGTGCCTCCAGTCGGCGTTTGATTATGCAATCCAGTCCGAGGGTTACGGTTCTCATTACCAAGGAGTTTACCCAGTGAAATGCAACCAGGACCGATTTGTGGTCGAGGATATCGTCAAATTTGGTTCGCCGTTCCGGTTCGGCCTGGAGGCAGGTTCCAAGCCGGAACTCCTTCTGGCTATGAGCTGTTTGTGCAAAGGCAACCCTGACGCGTTGCTAATATGTAACGGCTTCAAAGACGCGGAGTACATTTCTCTTGCCCTGGTCGCCAACAAGCTGGCTCTCAACACCGTTATTGTTCTGGAACAAGAGGAGGAGGTTGATTTAATCGTTGAATTGAGCAAGAAGCTTTGCATTAAGCCCGTGATTGGGTTGCGTGCGAAGCTCCGAACCAAGCATTCTGGCCATTTTGGTGCGACTTCAGGTGAGAAGGGTAAGTTTGGTCTGACCACCGCACAGATTCTCAGGGTTGTGAAGAAGCTGGACCTTGCTGGCATGCTGGATTGTTTGCAACTGCTGCATTTTCATATTGGTTCTCAGATTCCTTCGACAGCGTTGCTTGCTGATGGCGTGGGAGAAGCCGCGCAGATCTATTGTGAACTGGTTCGGTTAGGGGCGAACATGCGGGTCATCGATATTGGAGGTGGACTGGGCATTGATTACGACGGTTCCAAGTCGTGTGACTCTGATATTTCAGTCGGGTACAGTCTGGATGAGTATGCTGCCGCGGTTGTTCGCGCGGTTCAGTGTGTGTGCGATCGAAGGTCCGTCAAGAATCCTGTTATCTGCAGCGAGAGTGGAAGGGCCATCGTGTCTCATCAGTCGGTCTTGGTTTTTGAGGCTGTTGGCACTAGCAGCACCGTGGGCGGAGCCTCCTCCTTGGCTTTTTCCTCACCATATTTGGCGGGGGATCTGTCGGAGGACTACCGTTTTCTGTCGGAGGCGGCTTTTGGAGGGGATTATGAACGCTGTTTGGTGTACACGGAGGAGCTGAAGGAGCGATGCGTGGAGCAGTTCAAACAGGGGACGGTGTGCATGGAACAACTTGCAGCGGTAGATGGGTTGTGTGAGTTGGTGAGGAAGGCTGTTGGAGCTGGGGAACCTGTTCGAAGATACCACGTGAACCTTTCCGTTTTCACTTCCATTCCGGATGCGTGGGGCATTGAACAGGTGTTTCCCATAATCCCCATTCATCGTCTGGACGAGAAGCCTTCCGTGAGGGGTATTCTCTCGGATTTGACTTGCGACAGCGATGGGAAGATTGACAAATTCATCAACGGGGAGTCCAGCCTGCCGCTGCATGAAGTTGATGGAGGTGGTTACTATTTGGGAATGTTCTTGGGTGGGGCCTACGAGGAGGCGCTCGGTGGATTCCACAACTTGTTCGGCGGTCCCAGCGTTGTGAGGGTGTCGCAGAGCGATGGTCCTCACAGCTTCGCAGTCACGCGGGCCGTGCCGGGTCCATCATGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAAACTCTCAAGCACCGCGCGTACGAGTATGTCAGCCAAGACAATGCTGCGGTTCTGGCCTCTGGCCTTGCTCGCACTTTTGACAGGATGCCTTATCTGGTTCCCCTGTCTTCCTTTGAAGAAGCTGCCTTTCCCGTTTCCGATGAGGACGAGAGCGTGCAGTGGTCTTATTAG 2058 0.5447 MPALACCVDAAAPPGYAFAGDISFPAPVAFTDVPLPTTDDNTSHWSPSLSAALYNVDGWGGPYFSVNAAGNISVRSHGSATLSHQEIDLLKIVKKASDPKSVGGLGLQFPLIVRFPDVLKNRLECLQSAFDYAIQSEGYGSHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVLEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGATSGEKGKFGLTTAQILRVVKKLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVGYSLDEYAAAVVRAVQCVCDRRSVKNPVICSESGRAIVSHQSVLVFEAVGTSSTVGGASSLAFSSPYLAGDLSEDYRFLSEAAFGGDYERCLVYTEELKERCVEQFKQGTVCMEQLAAVDGLCELVRKAVGAGEPVRRYHVNLSVFTSIPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEVDGGGYYLGMFLGGAYEEALGGFHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAYEYVSQDNAAVLASGLARTFDRMPYLVPLSSFEEAAFPVSDEDESVQWSY* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1813 685 PIRSF ARGDC 33 661 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 54 595 IPR009006 GO:0003824
Vra5g1813 685 Gene3D - 414 491 - -
Vra5g1813 685 CDD PLPDE_III_ADC 106 593 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 147 165 IPR022653 -
Vra5g1813 685 SUPERFAMILY Alanine racemase C-terminal domain-like 489 596 IPR009006 GO:0003824
Vra5g1813 685 TIGRFAM speA: arginine decarboxylase 45 661 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 SUPERFAMILY PLP-binding barrel 115 397 IPR029066 -
Vra5g1813 685 PANTHER ARGININE DECARBOXYLASE 1 670 - -
Vra5g1813 685 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 328 341 IPR022657 -
Vra5g1813 685 Gene3D Alanine racemase 116 397 IPR029066 -
Vra5g1813 685 PANTHER ARGININE DECARBOXYLASE 1 670 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 142 395 IPR022644 GO:0003824
Vra5g1813 685 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 165 IPR000183 GO:0003824
Vra5g1813 685 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 171 183 IPR000183 GO:0003824
Vra5g1813 685 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 290 303 IPR000183 GO:0003824
Vra5g1813 685 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 385 404 IPR000183 GO:0003824
Vra5g1813 685 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 572 585 IPR000183 GO:0003824
Vra5g1813 685 PRINTS Arginine decarboxylase signature 115 130 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 139 153 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 197 212 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 223 244 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 247 269 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 375 392 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 498 519 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 523 548 IPR002985 GO:0006527|GO:0008295|GO:0008792
Vra5g1813 685 PRINTS Arginine decarboxylase signature 572 593 IPR002985 GO:0006527|GO:0008295|GO:0008792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1813 K01583 - gmx:548071 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1813 5 24116355 24119061 Vra5g1813 5 24116355 24119061 ECH