Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1805 ATGGCACCTCCCAACCTTTTTCCGATTCTTCTTCTCCTTCTTCTCTCTTTTACCGTCACTGCTCACGATTACCAGCAGGCATTGTCCAAGGCAATCCTCTTCTTCGAGGGCCAACGCTCCGGATTCTTGCCGCAGGACCAGAGAATGCAGTGGCGCGCCAATTCGGGTCTCGGCGACGGCTGGACCTACAACATCGACCTCACCGGCGGCTACTACGACGCCGGCGACAACGTCAAGTTCGGCTTTCCCATGGCATTCACCACCACAATGCTCTCCTGGAGTGTCATCGAATTCGGAGACATGATGCCTCCCAACGAGCACAGAAACGCGCTCGTGGCAATCCGTTGGGCTACCGATTATTTGCTCAAAACCGTTTCTCAGCCCAACCGCATTTTCGTTCAGGTAGGCGATCCAATCTCTGACCACAACTGTTGGGAAAGACCAGAGGATATGGACACAAGAAGGACTGTGTATGCCGTTGATGCACCGAATCCAGCTTCAGATGTGGCTGGTGAAACTGCTGCGGCACTAGCTGCTTCGTCCATGGCTTTTCGTTCATCGGATCCTGCTTATTCAGAGACTTTGTTACGAAATGCTGTCAAGGCATTTCAACTTGCAGATAACTATAGGGGTGCCTACAGTGATAATGTTGATGTGAGGGATGGTGTCTGCCCATATTATTGTGACTTCGATGGATATCAGGACGAATTGTTATGGGGAGCTGCATGGCTTAGAAGGGCCACTCAAGACGACAATTTCCTGAACTACATTCAAAGCAATGGCAAAACGCTGGGTGCTGAAGAAAACATAAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTTAATGTTCTTGTCTCTAAGGAAGTTCTAGAAGAAAATGCACTATCTCTTGATTCGTACAAGACTTCAGCGGAGAGCTTTCTGTGCACGCTGATACCCGAAACTTCAAGTTCACATATAGAGTACACTCCTGGTGGACTCATATACAGGCCAGGAGGTAGCAACTTGCAGCATGCAACTTCAATTGCTTTCCTCGAATTGGTTTACGCTAATTACCTATCACGCACTTCACAAACCATCAATTGTGGGAACATCTATGTTAATGCACAAACACTTCGCCAGCTTGCTAAGAAACAAGTTGATTACATTTTGGGTGATAACCCAATGGGTATGTCCTACATGGTTGGGTATGGCAACAAGTATCCACAGCGTATACACCATCGTGGCTCCTCTTTACCCTCCATAAAGGACCATCCTCAAGTCATTGCCTGTAAAGAAGGTTCAATCTACTTCAACTCGTCCAATCCTAATCCTAATGTTCTGGTGGGAGCCATTGTGGGAGGACCAGGAGAAGATGATCTCTATGGGGATGATAGGGCTGATTTTAGGAAGTCCGAACCAACCACATATATTAATGCACCATTCGTTGGGATTTTAGCATACTTTGTTGCTAACCCCAATCCTTGA 1470 0.4755 MAPPNLFPILLLLLLSFTVTAHDYQQALSKAILFFEGQRSGFLPQDQRMQWRANSGLGDGWTYNIDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGDMMPPNEHRNALVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTRRTVYAVDAPNPASDVAGETAAALAASSMAFRSSDPAYSETLLRNAVKAFQLADNYRGAYSDNVDVRDGVCPYYCDFDGYQDELLWGAAWLRRATQDDNFLNYIQSNGKTLGAEENINEFGWDNKHAGLNVLVSKEVLEENALSLDSYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNIYVNAQTLRQLAKKQVDYILGDNPMGMSYMVGYGNKYPQRIHHRGSSLPSIKDHPQVIACKEGSIYFNSSNPNPNVLVGAIVGGPGEDDLYGDDRADFRKSEPTTYINAPFVGILAYFVANPNP* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1805 489 PANTHER ENDOGLUCANASE 24 11 488 - -
Vra5g1805 489 Pfam Glycosyl hydrolase family 9 24 480 IPR001701 GO:0004553|GO:0005975
Vra5g1805 489 SUPERFAMILY Six-hairpin glycosidases 11 485 IPR008928 GO:0005975
Vra5g1805 489 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 383 409 IPR018221 -
Vra5g1805 489 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 456 474 IPR033126 -
Vra5g1805 489 Gene3D - 20 487 IPR012341 GO:0005975
Vra5g1805 489 PANTHER ENDO-1,4-BETA-GLUCANASE 11 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1805 Vra-Chr5 24076990 24080853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1805 6 486 Glycoside Hydrolase AT1G70710 60.000 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1805 K01179 - gmx:100799911 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1805 5 24076990 24080853 Vra5g1805 5 24076990 24080853 ECH