Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1801 ATGAGTTCAGACAGCCGCAGCAGGAGCCGGAGCAGAAGCAGGAGCCCAATGGACCGTAAGATCCGATCTGATCGATTTTCCTACCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGCCGAGACAATCTGTGCAAGAACTGCAAGAGGCCTGGTCATTATGCAAGGGAATGCCCTAATGTTGCAATCTGCCACAACTGTGGCCTCCCTGGGCACATTGCTTCTGAATGTACCACAAAGTCACTCTGCTGGAACTGTAAAGAACCTGGCCACATGGCCAGTAATTGTCCAAATGAGGGAATTTGCCATACCTGTGGTAAAGCTGGACACCGTGCTAGGGAATGCACCGCTCCTCCAATGCCTCCTGGAGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGCCACATAGCAGCTGAATGTACGAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGCCACTTGGCACGTGATTGTCCTAACGATCCTATTTGTAACTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCAAAAGCCAATGTTATTGGAGATCGCAGTAGTGGTGGAGGCGGTGGAGCTCGTGGTGGTGGTGGTGGTGGTTACCGGGATGTTATTTGCAGGAACTGTCAGCAATTAGGTCACATGAGCAGGGATTGCATGGGCCCCTTGATGATTTGCCACAATTGTGGAGGTCGTGGTCACCTGGCATATGAGTGCCCTTCAGGTCGGTTTATGGATCGCTACCCCAGGAGGTATTGA 774 0.5103 MSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASNCPNEGICHTCGKAGHRARECTAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANVIGDRSSGGGGGARGGGGGGYRDVICRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1801 257 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Vra5g1801 257 Gene3D - 205 248 - -
Vra5g1801 257 PANTHER OS10G0545300 PROTEIN 1 257 - -
Vra5g1801 257 Gene3D - 103 146 - -
Vra5g1801 257 Gene3D - 147 197 - -
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 66 79 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 85 100 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SUPERFAMILY Retrovirus zinc finger-like domains 125 165 IPR036875 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 210 226 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 46 62 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 230 246 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 65 81 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 167 183 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 211 224 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 168 183 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 SUPERFAMILY Retrovirus zinc finger-like domains 37 82 IPR036875 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 66 80 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 103 118 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 85 100 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 210 224 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 230 246 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 167 183 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 46 62 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 Gene3D - 82 102 - -
Vra5g1801 257 SUPERFAMILY Retrovirus zinc finger-like domains 200 248 IPR036875 GO:0003676|GO:0008270
Vra5g1801 257 Gene3D - 6 81 - -
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 104 117 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 PANTHER - 1 257 - -
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 47 62 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 ProSiteProfiles Zinc finger CCHC-type profile. 231 246 IPR001878 GO:0003676|GO:0008270
Vra5g1801 257 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1801 K09250 - gmx:100775501 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1801 5 24042487 24047313 Vra5g1801 5 24042487 24047313 ECH