Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1797 ATGGCTTCTTCCTCTCGCGGAAGGAGTAGCTCGCCGTTTTCTTACCGTAAACCTTCCACTCCTTATTCATCCACTTCTTCCTCTTCTTCCTTCACCAACGGAAGGTTAATGCCGCGCTCCGGCTCTTCCTCTACGTCGTCGTTTTTCAACTCCGGTGGCCGATCCATGACTCCCAGTCGTGGTCGCACCGAGTCAACGTACAACGGCTCTCGAGGTTACGCCGGCCGCTCTCCGGTGGCGTTCGGGGAGGAGGACCTAATTGCGGAGCCGGTGGATTCGTCCAAGTCCGGCGATAGCATTTCGGTCACGATTCGGTTTAGGCCGTTGAGTGAAAGGGAGTATCAGAGAGGGGACGAGATCGCGTGGTATGCGGATGGCGAGAAGATTGTCAGAAACGAGTATAATCCAGCTACTGCCTATGCATTTGATAGAGTTTTTGGACCACATACCAATTCTGATGAAGTGTACGAAGTAGCGGCAAAACCTGTAGTGAAGGCTGCCATGGAAGGCGTGAACGGAACTGTGTTTGCCTATGGAGTGACAAGTAGTGGTAAGACACATACTATGCATGGAGACCATAATTCACCTGGTATTATACCCCTGGCTATTAAGGATGTTTTCAGTATGATCCAAGATACCCCAGGAAGAGAATTCTTACTCCGAGTGTCATATCTAGAAATATACAACGAGGTGATAAATGATTTACTCGATCCAACTGGCCAAAATTTACGAGTTAGAGAAGACGCACAGGGAACTTACGTGGAGGGTATAAAGGAAGAAGTTGTTCTATCTCCTGGACATGCACTTTCCTTTATTGCTGCTGGAGAAGAGCACCGTCATGTTGGATCGAACAATTTTAATCTCTTTAGCAGCCGGAGTCACACAATATTTACACTGATGATAGAGAGCAGTGCCCATGGTGATGATTATGATGGAGTCATCTTCTCTCAGCTAAACTTGATTGATTTGGCTGGATCGGAGAGCTCAAAAACTGAAACAACTGGATTAAGAAGAAAGGAAGGATCTTACATCAACAAAAGTCTTCTGACACTCGGAACTGTTATCGGAAAATTGAGCGAGGGGAAGGCATCTCATGTTCCTTATCGAGATTCAAAGCTGACCCGCCTCTTGCAATCATCTCTTAGCGGACATGGACATGTTTCACTTATATGCACAGTAACTCCAGCGTCCAGCAATATGGAGGAAACTCATAATACCTTGAAGTTTGCCAGCAGGGCAAAACGTGTAGAAATATATGCCTCCCGTAATAAGATTATTGATGAGAAATCTCTAATTAAGAAGTACCAGAGAGAAATTTCTGTTCTGAAACTAGAACTTGATCAACTAAAGAAGGGGATGCTAGTTGGTGTCAATCATGAGGAAATTTTGACCTTAAAGCAAAAGTTGGAAGAAGGTCAAGTGAAAATGCAATCAAGATTGGAAGAAGAGGAGGAAGCCAAAGCTGCTCTTATGAGTAGGATCCAGAGGCTAACCAAACTCATTCTGGTTTCGTCAAAGAATGCAATTCCTGGATATCTAACTGATGTTCCCAACCATCAACGAAGTCATTCTGTTGGCGAGGATGATAAACTTGATGCCTTGCCTGATGGTGTGTTGATTGAAAATGAGAGTCAGAAAGATACTTCTGCGGTGTCATCTGATCTGTTTCATGATGGTAGACATAAAAGATCTTCTAGTAGATGGAATGAAGAGTTCTCCCCAGCTAGCAGTACTATAACTGAGTCAACACATGCTGGTGAATTGATCAGTAGAACAAAATTGACAATGGGTGGGATGACAGCGTCAGATCAGAAGGATCTCCTTGTTGAACAAGTCAAAATGCTAGCTGGAGATGTTGCTTTAAGTACTAGCACTCTGAAGCGGTTGATGGAGCAATCTGTAAATGACCCTGAAGGCTCCAAAATTCAGATTGAGAACTTGGAACGTGAGATCCAAGAAAAAAGGAAGCAAATGAAGGTGTTAGAGCAAAGATTAATTGAAATTGAGACCGGAGATTCTCCAGTGTCTAATTCATCACTAATTGAAATGCAGCAGACAGTGACAAGGTTAATGACTCAATGTAATGAAAAGGCCTTTGAGTTGGAGCTAAAATCTGCAGACAACCGTGTCCTTCAGGAGCAGCTAAACGATAAGTGTTCTGAAAACCGAGAGTTGCAAGAAAAGGTGAAGCAGCTAGAGCAGCAACTTGCAACAGCTACTAGTGGTACATTGTTAACGTCTTCTGAACAGTGTGCATCAGGAGAACACGCTGACGAGTTGAAAAAGAAAATACAATCCCAGGAAATTGAAAATGAAAAGCTAAAACTAGAGCAAGTTCACTTGTCAGAAGAGAATAGCGGGTTGCGTGTTCAGAATCAGAAACTCTCTGAAGAAGCTTCTTATGCCAAAGAACTGGCCTCTGCTGCTGCTGTGGAACTGAAAAATCTGGCTGGGGAAGTGACAAAACTTTCATTGCAGAATGCAAAGTTGGAAAAAGAATTGATGGCTACGCGAGATCTGGTCAACTCTCGTGGTGCTGTTGTGCAAACAGTTAACGGTATTAACCGCAAGTTCGGTGATGCAAGATCTGGAAGGAAGGGGAGGATTTCTAGCCGTGCTAATGAAATTTCAGGAGCTGTTGTGGATGATTTTGAGTCATGGAGTCTTGATGCTGATGATTTGAAGATGGAACTACAGGCTAGAAAACAAAGAGAGGCAGCTCTGGAGGCTGCATTAGCCGAGAAGGAATTTGTTGAGGAACAGTGCAGGAAAAAAGCTGAAGAGGCCAAGAAAAGAGAAGAGGCCTTGGAGAATGATCTAGCAAATATGTGGATCCTTGTTGCCAAGTTGAAAAAAGAAGGGGATGCTGTTCCAGAATCGAACATGGATAAGAAAAATGATGGTGCACAACAATTAAATGGTACAAAAATTAATGACATTGAAAGTAACACAGTTCCCAAGGAGCAGCTTTTTGATGCACCAAAACCAGATGATGAAATTCCCAAAGAAGAGCCATTGGTTGTTCGCCTCAAGGCTCGCATGCAAGAAATGAAGGAAAAAGAGCTCAAGTACCTTGGGAATGGCGATGCCAATTCCCATGTTTGTAAAGTATGTTTTGAATCTCCAACTGCAGCAATTCTGCTTCCATGCCGACATTTTTGTTTGTGTAAATCTTGTTCACTTGCTTGTTCTGAGTGTCCAATATGCCGCAGAAATATTACAGATAGGATTTTTGCTTTTACATAG 3246 0.4338 MASSSRGRSSSPFSYRKPSTPYSSTSSSSSFTNGRLMPRSGSSSTSSFFNSGGRSMTPSRGRTESTYNGSRGYAGRSPVAFGEEDLIAEPVDSSKSGDSISVTIRFRPLSEREYQRGDEIAWYADGEKIVRNEYNPATAYAFDRVFGPHTNSDEVYEVAAKPVVKAAMEGVNGTVFAYGVTSSGKTHTMHGDHNSPGIIPLAIKDVFSMIQDTPGREFLLRVSYLEIYNEVINDLLDPTGQNLRVREDAQGTYVEGIKEEVVLSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDDYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIGKLSEGKASHVPYRDSKLTRLLQSSLSGHGHVSLICTVTPASSNMEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISVLKLELDQLKKGMLVGVNHEEILTLKQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSSKNAIPGYLTDVPNHQRSHSVGEDDKLDALPDGVLIENESQKDTSAVSSDLFHDGRHKRSSSRWNEEFSPASSTITESTHAGELISRTKLTMGGMTASDQKDLLVEQVKMLAGDVALSTSTLKRLMEQSVNDPEGSKIQIENLEREIQEKRKQMKVLEQRLIEIETGDSPVSNSSLIEMQQTVTRLMTQCNEKAFELELKSADNRVLQEQLNDKCSENRELQEKVKQLEQQLATATSGTLLTSSEQCASGEHADELKKKIQSQEIENEKLKLEQVHLSEENSGLRVQNQKLSEEASYAKELASAAAVELKNLAGEVTKLSLQNAKLEKELMATRDLVNSRGAVVQTVNGINRKFGDARSGRKGRISSRANEISGAVVDDFESWSLDADDLKMELQARKQREAALEAALAEKEFVEEQCRKKAEEAKKREEALENDLANMWILVAKLKKEGDAVPESNMDKKNDGAQQLNGTKINDIESNTVPKEQLFDAPKPDDEIPKEEPLVVRLKARMQEMKEKELKYLGNGDANSHVCKVCFESPTAAILLPCRHFCLCKSCSLACSECPICRRNITDRIFAFT* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1797 1081 Coils Coil 466 500 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 1 72 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 553 568 - -
Vra5g1797 1081 PANTHER KINESIN-LIKE PROTEIN KIN-7D, MITOCHONDRIAL 59 1043 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 957 1002 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 569 583 - -
Vra5g1797 1081 Pfam Zinc finger, C3HC4 type (RING finger) 1033 1075 - -
Vra5g1797 1081 Gene3D Kinesin motor domain 90 446 IPR036961 -
Vra5g1797 1081 ProSiteProfiles Zinc finger RING-type profile. 1035 1070 IPR001841 -
Vra5g1797 1081 ProSitePatterns Kinesin motor domain signature. 316 327 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra5g1797 1081 PRINTS Kinesin heavy chain signature 170 191 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 PRINTS Kinesin heavy chain signature 284 301 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 PRINTS Kinesin heavy chain signature 317 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 PRINTS Kinesin heavy chain signature 366 387 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 MobiDBLite consensus disorder prediction 1 76 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 544 583 - -
Vra5g1797 1081 SUPERFAMILY RING/U-box 1034 1075 - -
Vra5g1797 1081 PANTHER CENTROMERE PROTEIN E 59 1043 - -
Vra5g1797 1081 Coils Coil 891 943 - -
Vra5g1797 1081 Coils Coil 644 671 - -
Vra5g1797 1081 CDD KISc_CENP_E 99 416 - -
Vra5g1797 1081 Pfam Kinesin motor domain 105 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 ProSiteProfiles Kinesin motor domain profile. 99 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 Coils Coil 432 452 - -
Vra5g1797 1081 MobiDBLite consensus disorder prediction 964 985 - -
Vra5g1797 1081 Coils Coil 708 742 - -
Vra5g1797 1081 Coils Coil 813 840 - -
Vra5g1797 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 451 IPR027417 -
Vra5g1797 1081 SMART kinesin_4 97 424 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra5g1797 1081 Coils Coil 757 784 - -
Vra5g1797 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1009 1080 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1797 Vra-Chr5 23996174 24007368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1797 35 1080 Miscellaneous Gene Families AT4G39050 71.201 0.0 1477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1797 K11498 - gmx:100812720 1806.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1797 5 23996174 24007368 Vra5g1797 5 23996174 24007368 ECH