Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1767 ATGAGTTCCAACACGAAGACGGACACGGAGGAGACAACCTCGAGCTCAACCTCGAAGGAGTCGAAAAAGAGGTTGCCGGATTTTTCGCAGAGCGTGAAGCTGAAGTATGTGAAACTGGGGTACCACTATCTGATGTCACACCTGGTGACCCTGTGCCTGCTCCCTCTGATGTCCGTAATCCTCATACAAGCCTCTCATATGAAGGCGCAGGACATTCAGGAGCTCTGGGCCCACCTCCAGTACAACCTCCTCAGCGTCATCGCTATTTCCGCCATCTTCGCCTTGGGATCCACCCTCTACATCATGACCCGCCCCACCTCCATCTACCTCCTCGACTTCTCCTGCTACCGTCCCCCAAATCACCTCACCGTCCACTTCCAAAAGTTCATCCACCACTCCACCCTCACCGGCGACTTCCTCCCCTCCTCCCTCGATTTCCAGCGCAAGATTCTCCTCCGCTCTGGCCTCGGCGAGGAAACCTACCTCCCCGAGGCCATGCACTCCATCCCCCCCCGCCCCTCCATGGCCGCCGCCAGGGAAGAGGCCGAACAGGTCATGTTTGGCGCCCTCGACAACCTCTTCGCCAACACCCGCGTCAAACCCAAGGACATCGGAATCCTCGTCGTTAATTGCAGCCTCTTCAACCCCACGCCCTCCCTTTCCGCCATGATCGTCAACAAGTACAAGCTCCGTGGCAATGTCAAAAGCTTCAACCTTGGCGGCATGGGCTGCAGCGCCGGCGTCATCGCCATCGATCTCGCCAAAGACATGCTTCAGGTTCACCGCAATACTTATGCCGTCGTCGTCAGCACCGAGAACATCACTCAGAATTGGTACTTCGGGAACAACAAGGCCATGTTGATACCCAATTGCCTCTTCCGCGTTGGTGGGGCCGCCATTCTCCTCTCCAACAAAAGCTCCGATAAAAGGCGAGCCAAATACAAGCTTTTGCACGTGGTGAGGACTCACAAAGGGGCGGATGACAAGGCCTTTCGGTGCGTGTACCAGGAACAAGACGATGCCGGAAAAACCGGCGTGTCTTTGTCGAAGGATCTCATGGCAATTGCCGGTGGGGCTCTTAAGACTAACATAACCACTTTGGGTCCCCTTGTGTTGCCTATAAGTGAGCAACTTCTTTTCTTTCTAACACTGGTTGTGAAAAAGCTTTTCAATGCGAAGATGAAGCCTTACATCCCTGATTTCAAGCTCGCGTTTGACCATTTCTGCATTCACGCTGGTGGGAGAGCCGTTATCGATGAGTTGGAGAAGAATCTGCAGCTTCTGCCTCTGCACGTGGAGGCTTCGAGGATGACGCTGCACAGATTCGGAAACACCTCGTCGAGTTCAATTTGGTACGAGTTGGCTTACACGGAGGCGAAGGGGCGGATGAAAAAGGGAAACAGAGTGTGGCAGATTGCGTTTGGGAGTGGGTTCAAGTGTAACAGTGCGGTGTGGGAAGCTCTCAGACACGTGAATCCCTCCCCCAAGAGTCCCTGGGAAGATTGCATTCATAAGTACCCTGTTGAGATTATTGCATAG 1539 0.5413 MSSNTKTDTEETTSSSTSKESKKRLPDFSQSVKLKYVKLGYHYLMSHLVTLCLLPLMSVILIQASHMKAQDIQELWAHLQYNLLSVIAISAIFALGSTLYIMTRPTSIYLLDFSCYRPPNHLTVHFQKFIHHSTLTGDFLPSSLDFQRKILLRSGLGEETYLPEAMHSIPPRPSMAAAREEAEQVMFGALDNLFANTRVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNVKSFNLGGMGCSAGVIAIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNNKAMLIPNCLFRVGGAAILLSNKSSDKRRAKYKLLHVVRTHKGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFLTLVVKKLFNAKMKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPLHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMKKGNRVWQIAFGSGFKCNSAVWEALRHVNPSPKSPWEDCIHKYPVEIIA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1767 512 PANTHER 3-KETOACYL-COA SYNTHASE 16 511 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g1767 512 Gene3D - 146 487 IPR016039 GO:0016746
Vra5g1767 512 PANTHER 3-KETOACYL-COA SYNTHASE 4 16 511 - -
Vra5g1767 512 PIRSF Very_long_ch_3-ktacl-CoA_syn 27 512 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g1767 512 SUPERFAMILY Thiolase-like 316 489 IPR016039 GO:0016746
Vra5g1767 512 CDD CHS_like 90 485 - -
Vra5g1767 512 Pfam FAE1/Type III polyketide synthase-like protein 100 389 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra5g1767 512 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 405 486 IPR013747 -
Vra5g1767 512 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g1767 512 SUPERFAMILY Thiolase-like 96 311 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1767 Vra-Chr5 23808652 23810897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1767 23 510 Miscellaneous Gene Families AT1G19440 81.148 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1767 K15397 - zju:107403372 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1767 5 23808652 23810897 Vra5g1767 5 23808652 23810897 ECH