Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1763 ATGGCTATCACTGCACCTTCTCCTTCAATTTTCCTCTTCCTTTCTCTATTTGCCATCACCTTCTCCCTCGCTAACTCTCAATCTTTCATAGGAGTAAACTATGGCCAGCTCGCCGACAACCTCCCGCCGCCGGACTCCACGGCCTCGCTTCTCAAATCCACATCCATCGGAAAAGTCCGCCTCTACGGCGCCGATCCCGCAATCATCAAGGCCCTCGCCAATTCCGGCATCGGAATCGTCATCGGCGCCGCCAACGGCGACATTCCGAGTCTGGCCTCCGATCCCAACGCGGCCACTCAGTGGGTTAACGCCAACGTGTTACCCTACTACCCAGCCAGCAACATCACTCTCATCACCGTCGGCAACGAGATTCTAACCTTGGCCGACCAGAGTCTTGCCTCCCAGCTCGTGCCGGCAATGCGAAATCTCCAGAATGCCCTCAACGCTGCCTCTGTGAAGATCAAGGTCTCCACGGTGCACTCCATGGCCGTGTTGACTCAATCGGATCCGCCGTCGTCCGGGCTGTTCAACCCAGCGCTCCAGAACACGCTGAAGCAGTTGCTGACTGTTCTGAAGGATAACAAATCGCCGTTCACGATTAACCCGTACCCGTTCTTCGCTTACCAGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGCCTCTTCCAACCGAACTCGGGGCGGGTCGACTCCGGCAACGGAAAGCTTTACACGAACATGTTCGATGCCCAGGTTGACGCTGTACATTCTGCTTTGACTTCGATGGGGTTCCAGGACGTGGAGATCGTGGTTGCTGAGACTGGATGGCCCTCACGTGGTGACAGTAACGAAGTAGGACCTGGTCTTGAAAATGCAAAGGCCTTTAACGGGAACCTGATTAATCATCTTAGATCATTGGTTGGGACACCTTTGATGCCTGGGAAGTCTGTGGACACTTACATTTTTGCACTCTATGATGAGGATCTCAAACCCGGTCCAGGATCTGAACGCGCGTTTGGGTTGTTCAAAACTGATGGTACCATGGCATACGATGCTGGCTTAGCCAAGTCTAGCCAGCAGGCTCCATCAACTAGTCCAAAAACTCCGGTTACTCCAGCCCCCAACACTTCTGGATGGTGTGTACCCAAAGCTGGAGTTTCTGATAATCAATTGCAAGCCAATATTGACTACGCCTGTAGCCATGGCATAGATTGTGGACCAATTCAACCAGGAGGTGCTTGTTTTGAGCCTAACACAGTAGCATCCCATGCTGCCTTTGCGATGAATCTCTACTACCAAACATCAGGCAAAAATCAATGGAACTGTGACTTCTCCCAATCAGCAACACTAACATCCCAAAATCCAAGTTACAATGGTTGCACATACGTTGGTGGGAGCACCTGA 1383 0.5249 MAITAPSPSIFLFLSLFAITFSLANSQSFIGVNYGQLADNLPPPDSTASLLKSTSIGKVRLYGADPAIIKALANSGIGIVIGAANGDIPSLASDPNAATQWVNANVLPYYPASNITLITVGNEILTLADQSLASQLVPAMRNLQNALNAASVKIKVSTVHSMAVLTQSDPPSSGLFNPALQNTLKQLLTVLKDNKSPFTINPYPFFAYQSDPRPETLAFCLFQPNSGRVDSGNGKLYTNMFDAQVDAVHSALTSMGFQDVEIVVAETGWPSRGDSNEVGPGLENAKAFNGNLINHLRSLVGTPLMPGKSVDTYIFALYDEDLKPGPGSERAFGLFKTDGTMAYDAGLAKSSQQAPSTSPKTPVTPAPNTSGWCVPKAGVSDNQLQANIDYACSHGIDCGPIQPGGACFEPNTVASHAAFAMNLYYQTSGKNQWNCDFSQSATLTSQNPSYNGCTYVGGST* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1763 460 MobiDBLite consensus disorder prediction 347 369 - -
Vra5g1763 460 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 7 11 452 - -
Vra5g1763 460 MobiDBLite consensus disorder prediction 347 368 - -
Vra5g1763 460 Pfam X8 domain 372 442 IPR012946 -
Vra5g1763 460 Gene3D Glycosidases 29 354 - -
Vra5g1763 460 Gene3D - 367 457 - -
Vra5g1763 460 Pfam Glycosyl hydrolases family 17 30 344 IPR000490 GO:0004553|GO:0005975
Vra5g1763 460 SMART X8_cls 371 455 IPR012946 -
Vra5g1763 460 SUPERFAMILY (Trans)glycosidases 30 345 IPR017853 -
Vra5g1763 460 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Vra5g1763 460 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 11 452 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1763 Vra-Chr5 23771974 23775283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1763 24 455 Miscellaneous Gene Families AT2G16230 66.359 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1763 - - gmx:100778892 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1763 5 23771974 23775283 Vra5g1763 5 23771974 23775283 ECH