LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1762	ATGGCTCAGCCGCTCGTGAAGAAGGACGATGACCGCGACGACGAAGCCGAGTATTCCCCCTTTATGGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCTAGAGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTGCTGAATCAGGGAGAGACATTTACAAAGGTTGAGGCAACAGAAGTTTTCTTTGCTGTTACTAAGCTTTTCCAGTCTAAAGATATGGGATTAAGGAGAATGGTCTATTTGATGATAAAGGAGATATCTCCATCTGCAGACGAGGTTATCATCGTCACAAGCTCTCTAATGAAAGATATGAATAGCAAAATTGACATGTATAAGGCCAATGCTATTCGAGTGCTTTGTCGAATCACTGATGGAACGCTCCTTTCCCAAATTGAGCGGTATTTAAAACAAGCTATTGTAGATAAAAATCCAGTTGTTGCTAGTGCTGCTTTAATTAGTGGCTTTCATCTGCTCCAGACAAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGGGCAGCCCTTGTACAATTTCATGCTCTGGCTTTGTTACATCAGATACGACAGAATGATCGATTGGCAGTAAGCAAGCTGGTTACCAGTTTGACAAGGGGGAGTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACTAGTCAGGTTATTTATGAATCAGGCAATAATACAGCGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGTCACAAGTCGGAGATGGTTATTTTTGAAGCTGCTAGAGCAATAACAGAGCTCAATGGTGTAACAAGTCGAGAATTAACTCCAGCAATTACTGTTCTTCAACTATTTTTAAGTTCTTCTAAGCCAGTGTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGATCAGAACAGAAGCATTGCTACCCTTGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATTACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTCCCTTTAAAATATCGATCTCTGATGAACTTCCTGAGTAATATTCTTAGGGAAGAAGGTGGTTTTGATTACAAGAAGGCAATTGTGGATTCAATTGTGATTCTCATTAGTGATATCCCTGATGCTAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAGTTCACTTATTTGTCTACACAGATACTTCACTTCCTGGGGATTGAAGGACCTAAAACATCAGACCCAAGCAAATACATTCGTTACATTTATAATAGAGTACATCTCGAGAATGCCATTGTTAGGGCAAGTGCCGTGAGTACACTGGCAAAATTTGGTGCTGCAGTTGATGCGTTGAAGCCCCGTATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGCGATAGGGCAACACTTTACCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAGGATGTAAAAGACTTCCTGTTTGGGTCATTTGATATCCCACTTGTTAATCTGGAGAATAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTAACTCTGTGCCCAAGGAGGTCAGGTCCCAGCCACTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCATCTGGTTTGGGTGCTCCTCCAAGTGGTCCCCTATCAACTGTAGATGTATATGAGAAGATGCTTTTGACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCTGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACCAACACAATAGCTGAGCAATTATTGGAAGATGTTATTGTGAATGTGGATGCTTCTGAAGCAGAAGAATTCTCAGAGGTGTTCTCCAAGCCTATCAGGTCTCTTCCTTATGATTCACCCGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTATCAGCAGTTGGAAAATTTTCGAACGTTCTGAAATTTATTGTTAAAGAGGTTGACCCTACCACTGGCGAGGCTGAAGATGACGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGGTTGTTGCTGCAGATTATGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCTTGGGAAAGCTTGGGCCCTGATTTTGAGCGAGTGGATGAGTACGGTCTTGGTCCAAGAGAGAGTTTGGCTGAAGCTGTAAATACTGTTATCAACCTACTTGGCTTGCAGCCCTGCGAGGGAACAGAGGAGGTTCCTCCCAATTCAAGATCACACACATGCTTGTTGTCAGGTGTATTCATAGGGAATGTAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCGAAGGATGTTGCAATGAAACTGTCTGTCAGATCGGAGGATGAAACTGTCAGCGATGCCATTCATGAGATTGTCGCAAGCGGCTAG	2664	0.4238	MAQPLVKKDDDRDDEAEYSPFMGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDMGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYKANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALISGFHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIYESGNNTASGERPFYDYLESCLRHKSEMVIFEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILISDIPDAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGSFDIPLVNLENSLKNYEPSEEAFDINSVPKEVRSQPLAEKKAPGKKPSGLGAPPSGPLSTVDVYEKMLLTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIAEQLLEDVIVNVDASEAEEFSEVFSKPIRSLPYDSPGQTFVAFEKPEGVSAVGKFSNVLKFIVKEVDPTTGEAEDDGVEDEYQLEDLEVVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLQPCEGTEEVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLSVRSEDETVSDAIHEIVASG*	888

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1762	887	Gene3D	Coatomer, gamma subunit, appendage domain	616	768	IPR037067	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Vra5g1762	887	Pfam	Adaptin N terminal region	29	540	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Vra5g1762	887	SUPERFAMILY	Subdomain of clathrin and coatomer appendage domain	772	884	IPR009028	GO:0006886\|GO:0016192\|GO:0030117
	Vra5g1762	887	SUPERFAMILY	Clathrin adaptor appendage domain	616	771	IPR013041	-
	Vra5g1762	887	SUPERFAMILY	ARM repeat	32	562	IPR016024	-
	Vra5g1762	887	Gene3D	-	23	316	IPR011989	-
	Vra5g1762	887	PANTHER	COATOMER SUBUNIT GAMMA	1	887	-	-
	Vra5g1762	887	Pfam	Coatomer gamma subunit appendage platform subdomain	623	767	IPR013040	GO:0005198\|GO:0006886\|GO:0016192\|GO:0030126
	Vra5g1762	887	Gene3D	-	769	885	IPR012295	-
	Vra5g1762	887	Pfam	Coatomer subunit gamma-1 C-terminal appendage platform	770	884	IPR032154	-
	Vra5g1762	887	MobiDBLite	consensus disorder prediction	592	614	-	-
	Vra5g1762	887	PIRSF	Gamma-COP	7	885	IPR017106	-
	Vra5g1762	887	PANTHER	COATOMER SUBUNIT GAMMA	1	887	IPR017106	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1762	Vra-Chr5	23764160	23770931	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1762	K17267		-	gmx:100814149	1612.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1762	5	23764160	23770931	Vra5g1762	5	23764160	23770931	ECH