Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1750 ATGGCCACCACGACCACCACCGCCACCACCGCCACCTCCGCCCCCTCCTCTGCCGCCGAACCTTCACCTTCTTCTGCGGAAACCCCTCCGGCCCCAATTCCTCCGAAGCAACCACCGCCTCCCCCGCAGCCTGCGTTGGCAGCGGTGAAGCCGGAGGCGCCATTGTCCGACCCGAAATCTTCCGCGGACGCGAACGTAATCTTGGTCCCGAGCTACTCTCGATGGTTCTCGTGGGACTCGATACACGAAAGCGAGGTGCGTCACCTCCCCGAGTTCTTCGAATCGGCGTCCAAAAGCCCTAGGGTTTACAAGTACTACAGGAATTCGATCGTGAAGTTCTTCAGGTACAATCCCACCCGAAAAATCACCTTCACGGATGTCCGCAAAACGCTCGTCGGAGACGTCGGTTCGATCCGCAGAGTCTTCGATTTTCTTGAAGCTTGGGGCCTTATCAATTACCACCCCTCTTCGTCGCTGACCAAACCCTTGAAGTGGGACGACAAAGAGACCAAACCCGATTCTGCGTCCAACCCCACCGAATCTTCTTCCGCTCCCGCCAAAGAAAACACGAAGAGACTCTGCAGTGGCTGCAAAGCCGTTTGTACCATTGCTTGTTTTACTTGTGACAAGTATGATTTGACTCTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAGCTCTGCGGATTTTAGGCGAGTGGAGATAAGCGAGGAGACAAAGACAGATTGGAGCGAAAAGGAGACAACAAATCTTCTGGAAGCTATTACGCATTATGGTGATGATTGGAAGAGGGTATCTCAGCATGTTGCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTTTGAAGCTTCCTTTTTCTGATCGATTCCAGAGTTATCAACAACAACCTGCTGTCAATGGCACTGATGACAGTTCTAATCAATTAAAGAGGGTAACTAATGCTGATGCTGAATCTGAATTGGATAATGTTGCCTCAGCTGAATCTAGTAAGAGAATGCGTCTCACGCCCATTGCGGATGCAAGCAATCCTATTATGGCTCAGGCTGCTTTCTTGTCTGCTTTGGCAGGGTCAGAGGTTGCACAGGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAGAATAAATTATCGGTCATTTCCAAGGAATACATTGCTGCAAGATGCCAGTGTCCCATTTAATGGTAGCAATACTTCAGATTCATTCCAAGGGTCTCGATTGCATGCACATATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGGAATTTCTGAGATTATAGAAGTTCAGATGAAAAGTATCCAAGACAAGCTTGTCCATTTTGAAGATTTAGACCTGCTGATGGAAAAAGAAAGGCAGCAGCTGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACTCTTTTATTTAATAAACCATCTGCTCCAAAAGCTGGAGAATGCCAAGAAGGAAATAGTGTAAAGACGAACCATGTTTGA 1515 0.4779 MATTTTTATTATSAPSSAAEPSPSSAETPPAPIPPKQPPPPPQPALAAVKPEAPLSDPKSSADANVILVPSYSRWFSWDSIHESEVRHLPEFFESASKSPRVYKYYRNSIVKFFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLTKPLKWDDKETKPDSASNPTESSSAPAKENTKRLCSGCKAVCTIACFTCDKYDLTLCARCYVRGNYRVGVSSADFRRVEISEETKTDWSEKETTNLLEAITHYGDDWKRVSQHVAGRTEKECVAHFLKLPFSDRFQSYQQQPAVNGTDDSSNQLKRVTNADAESELDNVASAESSKRMRLTPIADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATRINYRSFPRNTLLQDASVPFNGSNTSDSFQGSRLHAHIQLEKEELDVEKGISEIIEVQMKSIQDKLVHFEDLDLLMEKERQQLEQMKNMFFLDQLTLLFNKPSAPKAGECQEGNSVKTNHV* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1750 504 Gene3D - 242 293 - -
Vra5g1750 504 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 10 499 - -
Vra5g1750 504 SUPERFAMILY Homeodomain-like 64 163 IPR009057 -
Vra5g1750 504 MobiDBLite consensus disorder prediction 165 187 - -
Vra5g1750 504 MobiDBLite consensus disorder prediction 1 60 - -
Vra5g1750 504 CDD SANT 247 288 IPR001005 -
Vra5g1750 504 ProSiteProfiles SANT domain profile. 242 293 IPR017884 -
Vra5g1750 504 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g1750 504 MobiDBLite consensus disorder prediction 25 48 - -
Vra5g1750 504 Pfam SWIRM-associated region 1 419 480 IPR032451 -
Vra5g1750 504 Pfam Myb-like DNA-binding domain 245 288 IPR001005 -
Vra5g1750 504 Pfam SWIRM domain 70 153 IPR007526 GO:0005515
Vra5g1750 504 SUPERFAMILY Homeodomain-like 243 294 IPR009057 -
Vra5g1750 504 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 281 IPR017930 -
Vra5g1750 504 Coils Coil 452 472 - -
Vra5g1750 504 ProSiteProfiles SWIRM domain profile. 67 162 IPR007526 GO:0005515
Vra5g1750 504 SMART sant 243 291 IPR001005 -
Vra5g1750 504 Gene3D - 73 157 IPR036388 -
Vra5g1750 504 ProSiteProfiles Myb-like domain profile. 239 289 IPR001005 -
Vra5g1750 504 PANTHER SWI/SNF COMPLEX-RELATED 10 499 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1750 194 285 EF-hand Containing Proteins AT3G07740 34.234 9.45e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1750 K11649 - gmx:100779777 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1750 5 23647871 23651161 Vra5g1750 5 23647871 23651161 ECH