LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1734	ATGGCCTCTCATGCGGCTCTAGCTTCCACAAGGATCCCCACAAACACCAGGTTCCCATCCAAGGCTTCTCACTCTTTCCCAACCCATTGCACCTCTAAGAGACTTGAGCTCACAGAATTCTCTGGGCTAAGATCCTCTTCATCTGTCACCTACGCTAACAATGCTAGGGAATCTTCCTTTTTTGATACCGTGGTTGCCCAACTCACTCCCAAGACCAATGGATCCACTCCTGTGAGAGGAGAAACAGTGGCCAAGTTGAAGGTGGCAATCAATGGTTTTGGACGAATTGGCAGAAACTTTCTTCGTTGCTGGCACGGCCGAAAAGACTCACCCCTTGATGTTGTTGTTGTAAACGACAGTGGTGGTGTCAAGAATGCTTCACACCTGTTGAAATATGATTCTATGCTGGGAACATTTAAAGCAGATGTGAAGATACTAGACAATGAAACCATCACTGTTGATGGTAAGCCCATCAAGGTTGTTTCAAGCAGAGATCCTCTTAAGCTTCCTTGGGCTGAACTAGGAATTGACATTGTTATTGAGGGAACTGGAGTGTTTGTGGATGGCCCTGGGGCTGGCAAACACATCCAAGCAGGTGCCAAGAAAGTTATTATCACTGCTCCTGCAAAGGGTGCTGACATTCCAACTTATGTTGTTGGAGTAAATGAAGGGGACTACACTCATGAGATCGCTAACATTATAAGTAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCTTGGATGAAGAGTTTGGAATTGTGAAGGGAACCATGACAACCACTCACTCCTACACAGGAGACCAGAGGCTTTTGGATGCTTCACACCGTGACTTGAGACGAGCCAGGGCTGCAGCACTGAACATTGTCCCAACCAGCACTGGAGCTGCGAAGGCTGTGTCTCTGGTGCTGCCACAGCTGAAGGGGAAGCTGAATGGCATTGCACTCCGTGTGCCTACACCCAACGTTTCAGTTGTTGACCTTGTAGTGAATGTTGAGAAGAAGGGTCTCACTGCTGAAGATGTGAATGGAGCATTCAGAAAGGCTGCAGAGGGGCCATTGAAAGGTGTTCTTGATGTGTGTGATGTTCCACTGGTGTCCATTGACTTCCGCTGCTCTGATGTTTCTTCCACCATTGACTCCTCCTTGACCATGGTCATGGGAGATGACATGGTTAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGCCAAAGAGTTGTAGATTTGGCACATTTAGTAGCAAGCAAGTGGCCAGGAACACCTAAAGCAGGGAGTGGAGACCCATTGGAGGAATTCTGCGAGACAAACCCTGCTGATGAGGAATGCAAAGTTTATGAATAG	1356	0.4749	MASHAALASTRIPTNTRFPSKASHSFPTHCTSKRLELTEFSGLRSSSSVTYANNARESSFFDTVVAQLTPKTNGSTPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKILDNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYTHEIANIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGLTAEDVNGAFRKAAEGPLKGVLDVCDVPLVSIDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGTPKAGSGDPLEEFCETNPADEECKVYE*	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1734	451	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	195	208	IPR020831	GO:0016620
	Vra5g1734	451	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	233	251	IPR020831	GO:0016620
	Vra5g1734	451	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	260	276	IPR020831	GO:0016620
	Vra5g1734	451	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	316	333	IPR020831	GO:0016620
	Vra5g1734	451	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	357	372	IPR020831	GO:0016620
	Vra5g1734	451	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC	1	451	-	-
	Vra5g1734	451	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	85	255	IPR036291	-
	Vra5g1734	451	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	87	188	IPR020828	GO:0051287
	Vra5g1734	451	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	239	402	-	-
	Vra5g1734	451	Gene3D	Dihydrodipicolinate Reductase; domain 2	238	403	-	-
	Vra5g1734	451	MobiDBLite	consensus disorder prediction	8	27	-	-
	Vra5g1734	451	Pfam	CP12 domain	430	451	-	-
	Vra5g1734	451	Gene3D	-	87	415	-	-
	Vra5g1734	451	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	451	IPR020831	GO:0016620
	Vra5g1734	451	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	87	413	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Vra5g1734	451	MobiDBLite	consensus disorder prediction	1	27	-	-
	Vra5g1734	451	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	244	401	IPR020829	GO:0016620
	Vra5g1734	451	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	237	244	IPR020830	GO:0016620
	Vra5g1734	451	SMART	gp_dh_n_7	86	239	IPR020828	GO:0051287

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1734	Vra-Chr5	23553601	23556490	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1734	K05298		-	gmx:732571	825.854

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g1734	5	23553601	23556490	Vra5g1734	5	23553601	23556490	ECH