Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1721 ATGGGCGAGGTATCTGAAACGATGACGAAGAAGAAGAAGAAGGGACGCCCATCTCTTTTGGATCTTCAAAAGCGATCTCTCAAGAAGGAACAGCAACAGAACCACCACAACAACCACCGACAAAACAACCCCAATTCCACAAATTCACACTCAAAAAACACCAACGTTGCTACCCACGATGACGACGACGACGAGAGAAAGGAGAAGAAGCACAAGCTCCTCGTCGGGCTCAATTCCCATCTCCACAACCCGACATTATTCCCCAATTCCCAGCCATTCAATTCCGATCCCAAGAGGCGCAAGATTGACCCTCTCCACAACCACCAAACGGATGGGAAGGTTCCGAAAGCGACTGACAGTAAACATGGTTCGCAGGGGGAGTCCGGTCCCACTACACCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGGCTTCAAAAAAAGGACACACACGGGGTGTTCTCCGAGCCTGTGGATCCTGAAGAGCTTCCTGATTATCATGACATCATTAAGCACCCGATGGATTTTGGAACTGTGAGAAAGAAATTAGATGGGGGACTTTATACCGACTTGGAACAATTTGAGAAAGATGTGTTCTTGATTTGCTCTAATGCAATGCAATATAATTCATCGGATACCATTTACCATCGACAGGCCCGAGCAATGCAAGATATAGCAAGGAAGGACTTTGAGAATCTTAGACAAGATAGTGATGATAGTGAACCGCAGCCCAAAGTTGTGCAGAGAGGAAGGCCACCAGGCAAGCCCTCAAGAAAGTCACTAGGTATGCCTCCAGCTGAGCGCGTCGGACCTGAATCTTCTTCTGATGCAACTCTTGCTTCTGGCGGGGATATTGCTAGTGGCTCCAACGGTTATAATCTCAGGAAAGGACCAAGCAAATTTCAGCCTACAGATTCAATTGCTAGGCCCTACAACAACACTTTTAACAGTGGAGGGTATACTGGTTGGTCTGAATGGGAGAATGAATTTCCAGCTTCTGTTGTAAAAGCTGTGTTAAGATATGGAAAGAAGCAGTTTGTAGTTGATGAGACCAGGCGCGATTCTTACAAATTACCAGTGACTTCAGGAAATGAAGGACCGCTGTTGACCACAGTTGAAGATGAAGTCAAACAACTTCTTGCTGTAGGTATACACATGAAGCATAGTTATGCAAGAAGTCTAGCCCATTTTGCTTCAGATCTTGGTCCCGTTGTTTGGAAGATTGCTGCAAGTAAAATCAGCAGTGTTTTGCCTACAGGACATGAATTTGGTCCTGGATGGGTAAGTGAAAATGACGAGCCACAGAAACAGCACTTCCCAGTTTGTGACGAGGGTAGAACTTCAGACCCTCCCGTAGTAGAGGATTGTAAAAGTAGATTTTCTTCTCCATCTGGATCACTTCCCCTTGCAAATAGATCCTGCATGCAAAGTGCTGACATGGTTATAAATAATTATCAAAAAGAATTGAATTCGGCAATCAACATTGCTGGTGGATCTGAGTCCATAACTCCTGTGAAGATTCAGCAGGAATCCATGCCGCACCCTGATGATTTTGGTTCACATGATTGGTTAGGTTCTAATTTTTCACCACAAATGAAGATGGTAAGACTTGCTGACCTAACTGGGTCACCGGGTGCTGGGGTTGCTCCTCAAATGGATCCCATAAGCGGCCGCATTGCGCAGACAAATACTAATCCTTCTCTTTTGGGACAGTACGGGAGCAAATCAAGTCAATTAGAATCCGGTAATTTATTGGCCCGGGAATCTGGGTTTGAGCCACGAAGTTGGTCTCAAGGAATTGCTGGAAAATCATCTTGGCAGGGTTTGGAAGTTCCCACTAAACAGAAGTCTTTTGCACTTTCTAATGACTTGAATGGAAGGATTGGAACTACAAATTCACCCAGTAGTTCCAATGTGGAGGCTGGTTCTCAGTTGCAGCCTAATTTGGCATTACAGCTCTGA 1968 0.4527 MGEVSETMTKKKKKGRPSLLDLQKRSLKKEQQQNHHNNHRQNNPNSTNSHSKNTNVATHDDDDDERKEKKHKLLVGLNSHLHNPTLFPNSQPFNSDPKRRKIDPLHNHQTDGKVPKATDSKHGSQGESGPTTPLPDKKLLLFILDRLQKKDTHGVFSEPVDPEELPDYHDIIKHPMDFGTVRKKLDGGLYTDLEQFEKDVFLICSNAMQYNSSDTIYHRQARAMQDIARKDFENLRQDSDDSEPQPKVVQRGRPPGKPSRKSLGMPPAERVGPESSSDATLASGGDIASGSNGYNLRKGPSKFQPTDSIARPYNNTFNSGGYTGWSEWENEFPASVVKAVLRYGKKQFVVDETRRDSYKLPVTSGNEGPLLTTVEDEVKQLLAVGIHMKHSYARSLAHFASDLGPVVWKIAASKISSVLPTGHEFGPGWVSENDEPQKQHFPVCDEGRTSDPPVVEDCKSRFSSPSGSLPLANRSCMQSADMVINNYQKELNSAINIAGGSESITPVKIQQESMPHPDDFGSHDWLGSNFSPQMKMVRLADLTGSPGAGVAPQMDPISGRIAQTNTNPSLLGQYGSKSSQLESGNLLARESGFEPRSWSQGIAGKSSWQGLEVPTKQKSFALSNDLNGRIGTTNSPSSSNVEAGSQLQPNLALQL* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1721 655 MobiDBLite consensus disorder prediction 55 75 - -
Vra5g1721 655 ProSitePatterns Bromodomain signature. 153 210 IPR018359 -
Vra5g1721 655 PRINTS Bromodomain signature 151 164 IPR001487 GO:0005515
Vra5g1721 655 PRINTS Bromodomain signature 165 181 IPR001487 GO:0005515
Vra5g1721 655 PRINTS Bromodomain signature 181 199 IPR001487 GO:0005515
Vra5g1721 655 PRINTS Bromodomain signature 199 218 IPR001487 GO:0005515
Vra5g1721 655 PANTHER BROMODOMAIN CONTAINING PROTEIN 7 465 - -
Vra5g1721 655 MobiDBLite consensus disorder prediction 96 120 - -
Vra5g1721 655 MobiDBLite consensus disorder prediction 37 54 - -
Vra5g1721 655 Gene3D - 134 251 IPR036427 GO:0005515
Vra5g1721 655 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 7 465 - -
Vra5g1721 655 SMART bromo_6 129 237 IPR001487 GO:0005515
Vra5g1721 655 MobiDBLite consensus disorder prediction 1 36 - -
Vra5g1721 655 MobiDBLite consensus disorder prediction 276 310 - -
Vra5g1721 655 ProSiteProfiles Bromodomain profile. 148 218 IPR001487 GO:0005515
Vra5g1721 655 MobiDBLite consensus disorder prediction 235 310 - -
Vra5g1721 655 Pfam Bromodomain 143 222 IPR001487 GO:0005515
Vra5g1721 655 SUPERFAMILY Bromodomain 118 241 IPR036427 GO:0005515
Vra5g1721 655 CDD Bromodomain 136 232 - -
Vra5g1721 655 MobiDBLite consensus disorder prediction 1 135 - -
Vra5g1721 655 MobiDBLite consensus disorder prediction 625 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1721 Vra-Chr5 23477225 23481732 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1721 K22184 - gmx:100811115 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1721 5 23477225 23481732 Vra5g1721 5 23477225 23481732 ECH