Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1717 ATGGATCTTCGCCTAGGGTTCTTCACCTTATTAGCTCTCTTACAGGTCTTTCTAATTTTATATTCAGTAGAAGCGGACAATTTGTCCACAAGACTTCTTTTGACATCCAATGCCAACACAGCGGGGGAAAAACATTCCCAGGATTACTGTGCAATGTATGACATTTGTGGAAAGCGCAGTGACGGTAAAATAGTGAATTGTCCATATGGTTCCCCAGCTGTGAAGCCAGATGATTTGCTCTCATCCAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACGTTTGCTGTACAGAAGCTCAGTTTGACACATTAAGGACGCAAGTCCAACAGGCCATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTAAATCTGTTTTGTGAGCTTACGTGTTCTCCGAACCAGAGTTTATTCATCAATGTAACCTCAGTTAACAATATTGATGGTAATTTGACGGTGGGTGGGATTGATTATTTAATAGCCGATGCTTATGGTGAAGGGTTATATGAATCATGCAAAGAGGTAAAGTTTGGCACAATGAATTCTCGAGCTCTACAGTTCATTGGTGCTGGAGCTCAAAATTTTAGAGATTGGTTTGCTTTTATCGGTAGAAAAGCAGCCCCTGGTGGTCTTGGTTCACCATACGCGATTTCATTCAGGTCAAATGCAACTGAATCATCTGGCATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCATCTTCAGTATGCTCCGTTTCATCTTCAACTACCACCAATAAGAAGGATTCATGCTCCGTGAAAGTTGGGACTTTAGTGGTGAAGTGTGTTGACTTGATTTTGGCAGTCTTGTACATTATACTGATTTCTGTGTTCTTAGGTTGGGGACTGTATCATCGGATAAGAGAAAGAAATCCTACATACAGAACTAAATCAGTGTCTAATGTCATCAGTGATGGTGCACTGTATACCCGTAACAGGGATAAGAATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCTCGAGAAAACAGACATGAAGTCCGGCTCTCTGCTGTGCAGGGATATATGATAAATTTTTACAGGAAATATGGATCATATGTAGCTAGACATCCGATTGTGGTGTTGGCTTCATCTGTCGCTATTGTTCTTCTCCTTTGTCTTGGTTTAATCAAGTTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGAAGCAAAGCAGCACAAGAGAAGGAGTTTTTTGACAGTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAGTTCCAGATAATGGAAATAGTACATCACCAAGAATTGTGTCAGAGAACAACATTAAGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGTTCGATGGTATCTCTGCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTACAGTACTTCAAAATGGATCCCAAAAATTTTGATGATTACGGGGGAGTTGAGCATCTCAATTACTGTTTCGAGCATTATTCCTCAGCAGACCGATGTATGAGTGCATTTAAAGCTCCACTTGATCCAAGCACTGTATTAGGAGGATTTTCTGGAAATGATTATTCAGGGGCATCTGCATTCGTTGTAACTTATCCAGTAAATAATGCTGTTGATAAAGAAGGTAATGGAACAAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGCTGGTGAAGGATGAACTGTTACCAATGGTACAATCAAGAAATTTGACACTAGCTTTTTCATCTGAAAGCTCTGTTGAAGAAGAGTTGAAAAGAGAAAGTACTGCAGATGCTATTACTATATTGGTTAGCTATCTNGTGATGTTTGCTTATATATCTCTTACTCTAGGGGATACACTNCACCCTTCATTTTTCTATATTTCTTCAAAGGTGCTACTTGGCCTTTCTGGAGTCATTCTTGTTTTGTTGTCTGTCCTTGGGTCGGTTGGANTGTTTAGTGTGCTTGGTGTAAAATCTACTCTGATCATCATGGAAGTTANCCCTTTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAACGACTGGAGTTGCCCTTAGAAGAACGAATAAGCAATGCACTCGTTGAAGTTGGACCATCAATAACATTGGCTAGTGTTTCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATCCGTGTGTTTTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTTCTCCTGCAAGTTACTGCTTTTGTTGCTTTGATAGTTCTTGACTCTTTGCGGGCGGAGGATAAGAGGGTTGACTGTTTTCCATGCATAAAAGTACGTGGGGACCCTGATATAGGGATTGGACAAAGAAAACCTGGCTTATTAACTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATATGGGGTGTAAAAATAGTTGTCGTAGCTGTTTTTGTTGGATTTGCATTTGCTAGCATTGCATTGAGCACTAGAGTTGAACCTGGTTTAGAGCAAGAGATTGTTCTTCCTCGAGATTCGTATCTTCAGGGTTATTTTAGTAATGTTTCAGAATATCTCAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCTCCACAAACAAACCAGCTTTGCTCCATTAGCCGATGCAATTCAGACTCTCTTTTAAATGAGATTGCTAAAGTGGCCCTAGTACCAGATACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTTTAGTCTGGGTATCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGACAGCTCCTGTGTTTCAGTTGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCAGAATGATCGTCCATCTACAACTCAATTTAGGGAGAAACTGCCATGGTTCCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGGGGTCACGGGGCATACACCAGCAGTGTTGAACTGAAAGGCTACAACAATAGCATTATTCCCGCTTCATCATTTCGTACATATCATACCCCACTTAACAAGCAGATTGACTACGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTGCAAGAGTTTCTGATTCTTTAAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGATCAACCTTGCTATAGCTATTGGTGCAGTTTTTATTGTGTGCTTGGTTATCACGGGCAGTTTATGGAGTTCATCAATAATTTTGTTGGTCTTGGCAATGGTTGTTGTTGATCTTATGGGAGTGATGACCATTCTGAATATCCAGTTGAATGCTCTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCAGTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAAGCTTTGAGTACAATGGGTGCTTCAGTGTTCAGTGGCATCACATTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTATTTGTGATTTATTACTTTCGGATGTACTTGTCGTTAGTGCTTCTTGGTTTCTTGCACGGACTTGTCTTTTTACCGGTGGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCTATCTCTGAGCAAGGGGAAAATCGTTCATCAACATCTTCACGGCAGTAA 3882 0.4073 MDLRLGFFTLLALLQVFLILYSVEADNLSTRLLLTSNANTAGEKHSQDYCAMYDICGKRSDGKIVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVNNIDGNLTVGGIDYLIADAYGEGLYESCKEVKFGTMNSRALQFIGAGAQNFRDWFAFIGRKAAPGGLGSPYAISFRSNATESSGMKPMNVSTYSCGDISLGCSCGDCPSSSVCSVSSSTTTNKKDSCSVKVGTLVVKCVDLILAVLYIILISVFLGWGLYHRIRERNPTYRTKSVSNVISDGALYTRNRDKNENLPMQIHMMEDARENRHEVRLSAVQGYMINFYRKYGSYVARHPIVVLASSVAIVLLLCLGLIKFKVETRPEKLWVGPGSKAAQEKEFFDSHLAPFYRIEQLILATVPDNGNSTSPRIVSENNIKFLFEIQKKVDAIRANYSGSMVSLQDICMKPLDKDCATQSVLQYFKMDPKNFDDYGGVEHLNYCFEHYSSADRCMSAFKAPLDPSTVLGGFSGNDYSGASAFVVTYPVNNAVDKEGNGTRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSFFYISSKVLLGLSGVILVLLSVLGSVGXFSVLGVKSTLIIMEVXPFLVLAVGVDNMCILVHAVKRQRLELPLEERISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVRGDPDIGIGQRKPGLLTRYMKEVHAPILSIWGVKIVVVAVFVGFAFASIALSTRVEPGLEQEIVLPRDSYLQGYFSNVSEYLRIGPPVYFVVKNYNYSSESPQTNQLCSISRCNSDSLLNEIAKVALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGDSSCVSVGTCKDCTTCFRHSDLQNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYNNSIIPASSFRTYHTPLNKQIDYVNSMRAAREFSARVSDSLKIEIFPYSVFYMFFEQYLHIWKTALINLAIAIGAVFIVCLVITGSLWSSSIILLVLAMVVVDLMGVMTILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFSVASGDRDQRAKEALSTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSISEQGENRSSTSSRQ* 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1717 1293 Pfam Patched family 1062 1271 IPR003392 GO:0016021
Vra5g1717 1293 Pfam Patched family 423 906 IPR003392 GO:0016021
Vra5g1717 1293 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1272 IPR004765 GO:0005319|GO:0016021
Vra5g1717 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 800 - -
Vra5g1717 1293 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1079 1276 - -
Vra5g1717 1293 PANTHER PATCHED FAMILY PROTEIN 6 1290 - -
Vra5g1717 1293 ProSiteProfiles Sterol-sensing domain (SSD) profile. 631 794 IPR000731 -
Vra5g1717 1293 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Vra5g1717 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 608 794 - -
Vra5g1717 1293 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1290 - -
Vra5g1717 1293 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1080 1272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1717 Vra-Chr5 23429157 23445058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1717 14 1291 Miscellaneous Gene Families AT1G42470 71.194 0.0 1837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1717 K12385 - gmx:100784611 2244.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1717 5 23429157 23445058 Vra5g1717 5 23429157 23445058 ECH