Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1691 ATGTCTACACTGGTTTCTGAACCATTCCAAGCCTTGAGCTTGAAGCCTGTTTTCAGTGCTTCAGGCATTAAGGGCAAACGAGTCACTGCACTGTCACCACAAGGAAATGCCCTCACTGATTTCATTCAAACAGCCATTGCCGAAAAACCAGACATTGACTCTCCATTCAGCGTACTAGATTTGGGGGTCGTTATGGGCTTGTTGGAAAAATGGACCACCAAGCTTCCCACGGTCCGGCCCTTCTACGCCGTCAAGTGCAATCCCAACCTCGCCCTCATCGGGGCTCTCGCCGCCCTAGGCACCAGCTTCGACTGTGCCAGCAAAGCCGAGATTGAAGCCATTTTATCCCTTGGAGTCTCACCCGACCGCATCATCTACGCCAACCCTTGCATATCCGAATCCCACATCGAATACGCCGCCACCGTAGGCGTCAACGTCACAACCTACGACTCTAAAGACGAGGTAGAAAAGATACGCAAATGCCACCCCACGTGCGAGTTGCTTCTCCGCATCAGGCCGCCGCAAGAAAGTGGAGCGCGCACCAGCTTGGGCCTCAAATACGGCGCGCTTCCCGAAGAAGTCCCGGAGCTTCTGAGCGTGGCTCACGCCGCCGGACTCAAAGTGACGGGAGTGTCCTTCCACATTGGAAGTGGTGGAGGCGACCCGCAAGCTTACAAAGGAGCCATATCTGCGGCAAAGTCCGTCTTCGATATTGCTTCCCTGCTGGGCATGCCGAGAATGCGCGTTCTCGACATCGGCGGCGGCTTCACCTCCGGGCCGGAGTTCGACGTCGCGGCTATGCAAATCAACGCGGCAATTCAATGCAGCTTCGGGAAAGAGGAGCTGGTGGTTATTGGCGAGCCGGGTCGTTACTTTGCAGAAACGGCTTTCACGTTGGCCACGAAGGTTATCGGTAAACGCGTGAGAGGAGAGTTGAGGGAGTATTGGATTGACGATGGAATTTATGGAACGCTTATTAACATCGTATTTGACTACGCTACCGTCACGTGCATGCCACTCGCCTGCACCTCGAAACCTGAGAACCCTTTTTGCAGGGATTCCAAAACCTACTCTTCCACCGTGTTTGGACCAACCTGCGATTCACTTGACACTGTTCTTACGAATTACAAGCTTCCGGAATTGCAAGTGAACGATTGGCTCGTGTTCCCCAACATGGGTGCTTATACAACTTCGTCTTGCACTAACTTCAATGGCTTTAGCTCCTCAGTGAACTCCACATTCCTTGCATATTCCAACCCTATGACGCCGGAACAGACAATGTTCTAG 1287 0.5307 MSTLVSEPFQALSLKPVFSASGIKGKRVTALSPQGNALTDFIQTAIAEKPDIDSPFSVLDLGVVMGLLEKWTTKLPTVRPFYAVKCNPNLALIGALAALGTSFDCASKAEIEAILSLGVSPDRIIYANPCISESHIEYAATVGVNVTTYDSKDEVEKIRKCHPTCELLLRIRPPQESGARTSLGLKYGALPEEVPELLSVAHAAGLKVTGVSFHIGSGGGDPQAYKGAISAAKSVFDIASLLGMPRMRVLDIGGGFTSGPEFDVAAMQINAAIQCSFGKEELVVIGEPGRYFAETAFTLATKVIGKRVRGELREYWIDDGIYGTLINIVFDYATVTCMPLACTSKPENPFCRDSKTYSSTVFGPTCDSLDTVLTNYKLPELQVNDWLVFPNMGAYTTSSCTNFNGFSSSVNSTFLAYSNPMTPEQTMF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1691 428 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 294 393 IPR022643 GO:0003824
Vra5g1691 428 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 52 409 IPR009006 GO:0003824
Vra5g1691 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 82 100 IPR000183 GO:0003824
Vra5g1691 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 102 114 IPR000183 GO:0003824
Vra5g1691 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 205 218 IPR000183 GO:0003824
Vra5g1691 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 284 303 IPR000183 GO:0003824
Vra5g1691 428 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 393 406 IPR000183 GO:0003824
Vra5g1691 428 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 82 100 IPR022653 -
Vra5g1691 428 SUPERFAMILY PLP-binding barrel 53 296 IPR029066 -
Vra5g1691 428 SUPERFAMILY Alanine racemase C-terminal domain-like 277 407 IPR009006 GO:0003824
Vra5g1691 428 CDD PLPDE_III_ODC 53 409 - -
Vra5g1691 428 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 25 421 IPR002433 GO:0006596
Vra5g1691 428 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 68 293 IPR022644 GO:0003824
Vra5g1691 428 Gene3D Alanine racemase 64 292 IPR029066 -
Vra5g1691 428 PANTHER ORNITHINE DECARBOXYLASE-LIKE 25 421 - -
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 54 78 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 80 107 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 124 148 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 154 176 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 319 332 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 360 370 IPR002433 GO:0006596
Vra5g1691 428 PRINTS Ornithine decarboxylase signature 380 393 IPR002433 GO:0006596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1691 K01581 - gmx:547682 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1691 5 23220872 23222360 Vra5g1691 5 23220872 23222360 ECH