Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1687 ATGGACTCTTTCTCTCTCCTCTGCACCGGAGCGCTCCTCGCCGGCGGCCTCTACTGGTTCGTGTGCGTACTGGGCCCCGCCGAGCAGAAGGGAAAGCGCGCCACGGATCTGTCTGGCGGCTCCATTTCGGCGGAGAAAGTCCAGGACAACTACAAGCAGTACTGGTCGTTCTTCCGCCGCCCGAAGGAGATCGAAACGGCCGAGAAAGTCCCGGACTTCGTGGACACCTTCTACAATTTAGTGACCGACATCTATGAGTGGGGGTGGGGCCAGTCCTTCCACTTCTCCCCCTCGATCCCCGGCAAGTCCCACCATGAAGCCACGCGCCTCCACGAGGAGATGGCAGTGGATCTCATCCAGGCCGGCCCAGGAGACAGAGTCCTGGACGTGGGCTGCGGCGTGGGCGGGCCAATGCGCGCCATCGCAGCCCACTCCCGCGCTAACGTTGTGGGAATCACAATCAACGACTACCAGGTGAATCGTGCCCGCCTCCACAACAAGAAAGCCGGTCTGGACTCCCTCTGCGAGGTCGTCTGCGGTAATTTCCTCAACATGCCCTTCCCCGACAACTCCTTCGACGGCGCATATTCCATCGAGGCCACGTGTCATGCTCCCAAGCTCGAACAGGTATACGCTGAAATCTTCCGTGTGTTGAAACCGGGTGCGCTCTACGTATCGTATGAGTGGGTTACCACAGACAAGTACCGGGCCGACGACCCAGAACACGTGGAGGTCATCCAGGGCATTGAGAGGGGTGACGCCTTGCCTGGCCTCAGAAGCCACACTGACATAGCCGAAACAGCACGTAAGGTCGGGTTCGTCGTGGTTAAGGAACAGGATCTGGCTAAGCCGCCGGCTCAACCCTGGTGGAGCCGCCTGAAGATGGGCAGGATCGCTTACTGGCGAAACCACATCGTGGTCACCGTTCTTGCTGCCTTGGGAATAGCACCCAAGGGGACCGTGGACGTCCACGAGATGCTTTTCAAGACAGCTGATTATTTGACCAGAGGGGGCGACTCTGGGATTTTCTCCCCGATGCACATGATCCTCTGCAGAAAGCCCCACGACAGTGACGACCACGTCCAAACCTGA 1092 0.5925 MDSFSLLCTGALLAGGLYWFVCVLGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHHEATRLHEEMAVDLIQAGPGDRVLDVGCGVGGPMRAIAAHSRANVVGITINDYQVNRARLHNKKAGLDSLCEVVCGNFLNMPFPDNSFDGAYSIEATCHAPKLEQVYAEIFRVLKPGALYVSYEWVTTDKYRADDPEHVEVIQGIERGDALPGLRSHTDIAETARKVGFVVVKEQDLAKPPAQPWWSRLKMGRIAYWRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILCRKPHDSDDHVQT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1687 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 355 IPR029063 -
Vra5g1687 363 CDD AdoMet_MTases 126 230 - -
Vra5g1687 363 PANTHER - 1 357 IPR044625 GO:0008168|GO:0032259
Vra5g1687 363 Pfam Methyltransferase domain 128 224 IPR013216 GO:0008168
Vra5g1687 363 Gene3D Vaccinia Virus protein VP39 44 309 IPR029063 -
Vra5g1687 363 PANTHER 24-METHYLENESTEROL C-METHYLTRANSFERASE 3 1 357 - -
Vra5g1687 363 Pfam Sterol methyltransferase C-terminal 291 354 IPR013705 GO:0006694|GO:0008168
Vra5g1687 363 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1687 Vra-Chr5 23190593 23191964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1687 116 222 Acyl Lipid Metabolism Gene Families AT1G73600 32.710 2.32e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1687 K08242 - gmx:100804517 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1687 5 23190593 23191964 Vra5g1687 5 23190593 23191964 ECH