Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1685 ATGGCTTCTATCAAATCATGTCCACGGTTGCGCCACTCCCTCTCACCTCTCCTACCCTGCACTTTCAAGCAACACTGTTCTTCGGCTTCGCTTCCCGAACCTCTTCTCCAACCTTATTCGAACGACACATCCCAAATTCCAAACCTATCCTCCGAGGAAACCACCTTAGCAGACAAACTCCACGCCGCCATCAAAGAACACCACCGCAAACACCCCACGCCAAATCCCAATGCCCCTCCCCCTGCACCCAATCTTACCATCCCCGACCTCTCCCTTGACTTCTCCGCGCTCTCCGCCGCTCACACGCTCTCCCCCGCCGTCGCCCGCCACGTCATCGAGAAATGCGGCGCAGTCCGCCACGGAATCCCCTTCCTCCAATCCCTCGCGTTCTTCAACTGGGCCACTGCCCTTGACGGATTTCCCCCCTCGCCAGAGCCCTACAACGAGATGCTCGACCTCGCCGGAAAGCTGAGACATTTCGACCTCGCGTGGCACGTGATCGACCTTATGAAGACTCGTGGCGTCGAAATCAGCGCTCACACGTTCTCTGCTCTCGTCCGCCGCTATGTGAGGGCTGGATTACCTGCGGAGGCTGTGCACGCTTTCAACCGCATGGAGGACTATGGCTGCACTCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGAGAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTTTACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAGGCTGAAGAGGTGTTTAATGATATGAAGATGGCTGGGATTAAGCCTAATGTTTATACTTACAGCATTGTGATTGATTCGTTGTGCCGATGTGGGCAAATTACGCGTGCTCATGATGTTTTCGCGGAGATGATTGATGCAGGGTGTGATCCTAATGCTGTTACTTTCAACAGTTTGATGCGGGTTCATGTTAAGGCTGGGAGGACTGAGAAGGTGTTGCAGGTTTACAATCAGATGAAGAGGCTAGGTTGTCCTGCAGATACCATTAGCTACAATTTCATCATTGAGAGTCATTGCAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTCAATTTGATGGTGAAGAAAGGGGTTGCTCCTAATGCATCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCAAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGACGAGAATCAGGTTGAACCTAATGTAAACACTTACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTAATGAAGGAAATGGTTGAAGAAAAATGCCTAAAACCCAATCTATCAGTTTATGGAACGGTTCTGGAGCTGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGAGAAGATGGTTTTGAGGGGATTCGTCACTCGCTCTTTGTAG 1593 0.479 MASIKSCPRLRHSLSPLLPCTFKQHCSSASLPEPLLQPYSNDTSQIPNLSSEETTLADKLHAAIKEHHRKHPTPNPNAPPPAPNLTIPDLSLDFSALSAAHTLSPAVARHVIEKCGAVRHGIPFLQSLAFFNWATALDGFPPSPEPYNEMLDLAGKLRHFDLAWHVIDLMKTRGVEISAHTFSALVRRYVRAGLPAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFESLKHKFEPDVLVYTSLVYGWCRAGNISKAEEVFNDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLMKEMVEEKCLKPNLSVYGTVLELLRNAGQLKKHEELVEKMVLRGFVTRSL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vra5g1685 530 Gene3D Tetratricopeptide repeat domain 313 403 IPR011990 GO:0005515
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 147 178 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 354 388 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 460 493 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Vra5g1685 530 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vra5g1685 530 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 10 529 - -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vra5g1685 530 Gene3D Tetratricopeptide repeat domain 123 240 IPR011990 GO:0005515
Vra5g1685 530 Gene3D Tetratricopeptide repeat domain 404 528 IPR011990 GO:0005515
Vra5g1685 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 529 - -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vra5g1685 530 SUPERFAMILY TPR-like 187 426 IPR011990 GO:0005515
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vra5g1685 530 Pfam PPR repeat family 421 469 IPR002885 -
Vra5g1685 530 Pfam PPR repeat family 246 295 IPR002885 -
Vra5g1685 530 Pfam PPR repeat family 184 226 IPR002885 -
Vra5g1685 530 Pfam PPR repeat family 352 397 IPR002885 -
Vra5g1685 530 Gene3D Tetratricopeptide repeat domain 241 312 IPR011990 GO:0005515
Vra5g1685 530 Pfam PPR repeat 319 349 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vra5g1685 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vra5g1685 530 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1685 Vra-Chr5 23173705 23175674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1685 221 526 Glycosyltransferase AT1G05670 20.245 8.47e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1685 - - gmx:100800850 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1685 5 23173705 23175674 Vra5g1685 5 23173705 23175674 ECH