Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1683 ATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCAACATCCACAGCGTTCCATTTCCAGTTTCGTACCTTACCTTCTTCTTCACTCTTTCTCTATGCTACGAGCTATAAATTTCGTTCTACCACAGCGAGCGCTGGTTCTGGTTTAACCGGCCACTCAGACTCCGATGGAGATAGAAAATTGAACTTCTCCGGTGTGCGGTTGGAGGAGGCTGTCGATAGCACAATAGGATCTGCAAAACTAAGACTCGATAGTTGGATCTCTTCCCGCATCAACGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTTAATGGTCGTGTCGTTGATAAGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATTGCGGAGTTGCAGAAGTTGAGGGCTGTGCCAGAGAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTAATAGATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACATCGGGGACGCTTGTCAATGGCATTCTTCACCATTTCAATCTTCCAAATGTTGAATTTTCTAAAGACGAATCTCTTTCAGATACAGAAGATTCTGATGACGAGGTTAATAGCTATGGCTCCATGACAAGTTCTTATGAAGGATCACATTCTATATTGTCTATGTCATCAATTCGACCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGTTACTTGTTGTTGCAAAGGATGAGCATTCACATATGAAATTATCTGAGCAATTTAAGCAACGCACCATCAAGAGGGTTTATGTTAGTCTTACCGCTGGGGTACCCACTCCGGTTTCTGGGCGAGTTGAGGTTCCAGTTGGCCGTGATCGTAATAACCGATTGCGTATGACTGCTGTAGCTGGACCAGCCAATTCTAGAAATGCCCGTCATGCTGCTAGTAGGTACAGAGTAATTGAGATACTTGCTGGGGGAAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTTCCTTTACTCGGTGATGAGGTGTATGGAGGGACAAAAAGCATGGTCTTGTCACTACTAAGGCCCCGAACTCCCATCAGTTTGCATGGAAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACACTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTGTAGACTTCGATGAGATTTTGAGCCAGCTTCGTAAAATTGGTAGTGAGAATGTTTCTTTCTCAAAGCGTTCAAATTTTTGA 1347 0.4447 MLSFHSCGCCRVSTSTAFHFQFRTLPSSSLFLYATSYKFRSTTASAGSGLTGHSDSDGDRKLNFSGVRLEEAVDSTIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVIDKPAHMVVHPAPGNTSGTLVNGILHHFNLPNVEFSKDESLSDTEDSDDEVNSYGSMTSSYEGSHSILSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPTPVSGRVEVPVGRDRNNRLRMTAVAGPANSRNARHAASRYRVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSRLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRKIGSENVSFSKRSNF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1683 448 PANTHER RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D 79 434 - -
Vra5g1683 448 ProSitePatterns Rlu family of pseudouridine synthase signature. 237 251 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g1683 448 MobiDBLite consensus disorder prediction 196 221 - -
Vra5g1683 448 SUPERFAMILY Alpha-L RNA-binding motif 81 169 - -
Vra5g1683 448 ProSiteProfiles S4 RNA-binding domain profile. 82 155 - -
Vra5g1683 448 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 79 434 - -
Vra5g1683 448 SUPERFAMILY Pseudouridine synthase 142 433 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g1683 448 CDD S4 83 160 - -
Vra5g1683 448 Pfam S4 domain 83 129 IPR002942 GO:0003723
Vra5g1683 448 Gene3D Pseudouridine synthase 139 421 - -
Vra5g1683 448 Pfam RNA pseudouridylate synthase 156 351 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g1683 448 SMART s4_6 82 147 IPR002942 GO:0003723
Vra5g1683 448 CDD PseudoU_synth_RluA_like 157 406 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra5g1683 448 Gene3D - 70 138 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1683 Vra-Chr5 23158548 23164959 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1683 K06180 - gmx:100810383 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1683 5 23158548 23164959 Vra5g1683 5 23158548 23164959 ECH