Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1645 ATGGGAGAAAAATCGAAGTCCAAAGGAGGGTGTTGCGGTTGGTTCATCGCATTTGTCGTTCTGGCCGTCGTCGTCGGTGCTATTGTTTTTACTGTCAAGAAGAAATTCGGTCATTCCGGTTCTGATAAAGCTGCTCCAGTTCCCGGTCCCCCTGGCGCCGTTGATCAAAAATACGCCACTGCACTAAAAACCTCACTGCAATTCTTCGATGTTCAAAAATCTGGGAAGTTAGTCAACAACAAAATACCTTGGAGAGGGGATTCGGGTCTTAAGGATGGGAGCCAAGCGAATCTGGATCTCACAAAAGGACTGTATGATGCTGGGGATCACATGAAATTTGGTTTGCCGTTGGCTTATACGGCGACGGTGTTGTCGTGGGCCATTCTGGAATATGGAGATCAAATGGATCACGTTGGCCAGTTAGACTCGGCTCAAGATTCGCTCAAGTGGATCACTGATTATCTCATCAATGCTCACCCTTCTGCTGATGTTCTTTACATTCAGGTGGGTGATCCTGTTGCAGATCACAAGTGTTGGGAAAGACCAGAAGAAATGACTGAAGCTCGACCACTCACACAAGTGAATGCATCTCATCCTGGATCAGACGTTGCAGCAGAAACTGCAGCTGCCATGGCCTCAGCATCTTTGGTCTTTAAAAAGTCTGATTCTTCGTATTCAAGCACACTCCTCAAGCATGCAAAACAGTTGTTCACTTTTGCTGACAAAAATAGGGGATATTATAGTGAGAGTATACCTGACGTTCAGACATATTATAACTCAAGTGGATATGGTGATGAGCTTTTATGGGCTGCTAGCTGGCTCTATCATGCTACGGGTGATGATTCTTACCTTGAGTTTGTGACTGGCCAAGATGGAGAAGACTATGCTGAATGGGGAAGCCCAACCTGGTTCAGTTGGGATAACAAGCATGCTGGAACTCAGGTTTTGTTAGCTAGATTAAGCTTTTTTAAGGCAAAGGGCATTTCAGATTCGTATGGCTCTGGGCTCCAAAGTTACAAGGAAACAGCCGAGGTTGTAATGTGCAGCCTTCTTCCGGATTCACCATCAGCCACAAAAAGCAGAACAGAGAATGGTCTTATATGGGTGACCGAATGGAACGCTTTGCAACATGCTGTTGCATCTGCGTTCTTAGCTGTTATTTACAGCGACTATATGCTAACATCGCGGACACCAAATCTAAAATGCGATTCAGATTCCTTTACCCCATCAGATCTTCGAGACTTTGCCAAATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTATGGATATGAGTTTTCTGGTGGGTTATGGCGATAAATTCCCGCAATTCGTGCATCATAGGGGTGCTTCAATTCCTGCCGATGCAAAAACTGGGTGCAGTGATGGTTTCAAGTGGCTTGAATCATCTGATCCAAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCCTTCAAGAATGACACTTTCATTGATTCCAGGAACAATACAATGCAAACAGAACCAAGCACGTACAATAGTGCTGTCATAGTCGGTCTCCTATCAAGTTTAGTCACCACGTCTTCTGTTGTTCAATCCTTCACCTAA 1590 0.4516 MGEKSKSKGGCCGWFIAFVVLAVVVGAIVFTVKKKFGHSGSDKAAPVPGPPGAVDQKYATALKTSLQFFDVQKSGKLVNNKIPWRGDSGLKDGSQANLDLTKGLYDAGDHMKFGLPLAYTATVLSWAILEYGDQMDHVGQLDSAQDSLKWITDYLINAHPSADVLYIQVGDPVADHKCWERPEEMTEARPLTQVNASHPGSDVAAETAAAMASASLVFKKSDSSYSSTLLKHAKQLFTFADKNRGYYSESIPDVQTYYNSSGYGDELLWAASWLYHATGDDSYLEFVTGQDGEDYAEWGSPTWFSWDNKHAGTQVLLARLSFFKAKGISDSYGSGLQSYKETAEVVMCSLLPDSPSATKSRTENGLIWVTEWNALQHAVASAFLAVIYSDYMLTSRTPNLKCDSDSFTPSDLRDFAKSQADYVLGKNPMDMSFLVGYGDKFPQFVHHRGASIPADAKTGCSDGFKWLESSDPNPNVATGALVGGPFKNDTFIDSRNNTMQTEPSTYNSAVIVGLLSSLVTTSSVVQSFT* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1645 529 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 422 448 IPR018221 -
Vra5g1645 529 PANTHER ENDO-1,4-BETA-GLUCANASE 11 529 - -
Vra5g1645 529 PANTHER ENDOGLUCANASE 2 11 529 - -
Vra5g1645 529 Gene3D - 55 522 IPR012341 GO:0005975
Vra5g1645 529 Pfam Glycosyl hydrolase family 9 58 515 IPR001701 GO:0004553|GO:0005975
Vra5g1645 529 SUPERFAMILY Six-hairpin glycosidases 56 520 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1645 Vra-Chr5 22873383 22881315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1645 1 528 Glycoside Hydrolase AT1G75680 68.809 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1645 - - gmx:100820195 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1645 5 22873383 22881315 Vra5g1645 5 22873383 22881315 ECH