Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1636 ATGTCTGCATCTGAAGCGGAGAAGAAGGTGGAGGAAGAGAGGGAGGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGCCGGCGCAAGGGCATCGTCGACGGCAACCTCGTCTCTCCCTCGCGCCTCCGTCCTCTTGTCGGTGTTGATATTCGTTTCGTCGCCTCCGGTTGCGTCTCTTGTCATTGCGTTGCATTGGACGTCGAAGGGCGTTGCTACACTTGGGGACGGAATGAGAAAGGGCAACTGGGTCATGGAGATATGATTCAACGTGACAGACCAACTGTTGTGTCTGAACTTTCCAAGTACAAAATTCTCAAAGCTGGAGCAGGGAGGAGCCATACTGTGGTTGTTACGGAGGATGGAAATTCCCTGGCCTTTGGATGGAACAAGCATGGACAACTAGGTTCGGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCGTTGAAGGAGCTTCTATATTAACTGCAGGGCTTCCACAGTATGGACAGCTTGGGCACGGTACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGCCCTAGAGCAATTGCTGCTCTTGCTGGGGAAACAGTTGTGAAAGTGGCTTGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTATGTCTACACGTGGGGTTTTGGTGGTTACGGAAGGCTAGGACATAGAGAGCAGAAGGATGAGTGGGTCCCACGCCGTGTTGAAGTTTTCCAGAATAGAAATCTTTTACCGCCTGATGCCATTGTTTCTGCTGGTTCTGTGAGTTCTTCATGTACAGCAGGTGGTGGGCAGTTGTACATGTGGGGAAAATTAAAGAACACTGGGGACGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGGTGGAATATACGATGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGTGAGCTGGGATATGGACCTAGTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATATACTTGAGGGTATGCATGTAATAAGTGTTGCTTGCGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGGAAAGCTGTTGGTGAAGGTAATGAGGTTGTAAATACTACTGCAGCTCCCAAGCAGGCAGCAAAAAAGGGTGCCAAGGCAGCTGAGAATTCGAAGAAGAGGAAAAAGTCGAAAGATTCATCAGAGTCAGAAGATGAAGAGGAAGAGGATGCTGCTGAGGAAAGTGATGATAGCGAGGATGATGAAATTAATGGCGAGGCTGATGTGAAAAGGTCGCGTAGTTCTGGCAAAGGCCGAGGTAAGGCATCTAAAACGTCCAGTGCCAAGGGAAAGGGCTCGGCTGCAAAGGGAAAAGGTGGCGGGCGAGGGCGCGGTGGGACTTCAGCTAATAAGAGTAGTTCAAAATCCCCTCAGGTGAAATCTGGTAAGAGAGGAAGGCCTCGTAAGTCATAA 1641 0.4839 MSASEAEKKVEEEREEVKGGELLFCGATCWDIIGRRKGIVDGNLVSPSRLRPLVGVDIRFVASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSELSKYKILKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSVEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAALAGETVVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWVPRRVEVFQNRNLLPPDAIVSAGSVSSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPSGQKSSAVPKKVDILEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEVVNTTAAPKQAAKKGAKAAENSKKRKKSKDSSESEDEEEEDAAEESDDSEDDEINGEADVKRSRSSGKGRGKASKTSSAKGKGSAAKGKGGGRGRGGTSANKSSSKSPQVKSGKRGRPRKS* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1636 546 Gene3D - 210 406 IPR009091 -
Vra5g1636 546 Gene3D - 11 209 IPR009091 -
Vra5g1636 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 182 247 IPR000408 -
Vra5g1636 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 115 125 IPR000408 -
Vra5g1636 546 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Vra5g1636 546 PRINTS Chromosome condensation regulator RCC1 signature 112 125 IPR000408 -
Vra5g1636 546 PRINTS Chromosome condensation regulator RCC1 signature 131 147 IPR000408 -
Vra5g1636 546 PRINTS Chromosome condensation regulator RCC1 signature 234 250 IPR000408 -
Vra5g1636 546 PRINTS Chromosome condensation regulator RCC1 signature 250 264 IPR000408 -
Vra5g1636 546 PANTHER PROTEIN RCC2 4 531 IPR028641 -
Vra5g1636 546 MobiDBLite consensus disorder prediction 522 536 - -
Vra5g1636 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 303 IPR000408 -
Vra5g1636 546 SUPERFAMILY RCC1/BLIP-II 19 402 IPR009091 -
Vra5g1636 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Vra5g1636 546 MobiDBLite consensus disorder prediction 459 479 - -
Vra5g1636 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 179 IPR000408 -
Vra5g1636 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 402 IPR000408 -
Vra5g1636 546 Coils Coil 3 23 - -
Vra5g1636 546 MobiDBLite consensus disorder prediction 430 546 - -
Vra5g1636 546 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 77 128 IPR000408 -
Vra5g1636 546 Pfam Regulator of chromosome condensation (RCC1) repeat 353 399 IPR000408 -
Vra5g1636 546 Pfam Regulator of chromosome condensation (RCC1) repeat 247 285 IPR000408 -
Vra5g1636 546 Pfam Regulator of chromosome condensation (RCC1) repeat 76 125 IPR000408 -
Vra5g1636 546 Pfam Regulator of chromosome condensation (RCC1) repeat 185 244 IPR000408 -
Vra5g1636 546 Pfam Regulator of chromosome condensation (RCC1) repeat 128 174 IPR000408 -
Vra5g1636 546 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1636 Vra-Chr5 22787593 22794135 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1636 - - pvu:PHAVU_009G015100g 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1636 5 22787593 22794135 Vra5g1636 5 22787593 22794135 ECH