Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1632 ATGAGTAGAAGACCACCTCCTGATCCCGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTTTAAGCCGATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGAATTTGGGATACCCTTCAACATCGAACTTTGTCATCTGCATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCTTGTGTTTCTTCCCTCGGGACCAATAAATTTGCCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCAAGGATCCCATCACTTACAATCAAGACAAACAGTTACCACTTTTGCAAGTTTTCCGTGATGAAGAATGATTCTGTTGGGTCAACAGAAGGGAAAGAATTAGAAGATTGCAACAGAAGAGAGCCAGGAGGAATGTCTGATAGTGAAATTCTGGAGGTTAAAAGGGACGAGGCTTACACCAATAAAAGTTGTTCTACAAGCTTTGGAGAAAATACATATAGTGGAGGGCTACAATGTGTGGCTTTGTCAGGGGAGAACTCTTCAGAGGTCGAAATTTGGGATCTCAAGTCAGCTGAAAAAATTGTACAACTCCCTTCAAGCAATCCCATTAACTCTTCAAGTGTTAGCAACAGAGGGATGTGCATGGCACTTCAATTGTTTTTATCATTGGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATATACGGAATCCTAAAGTTCCAGTAACTTCTGTAAAATTTCATTCTGAGCCAGTTCTGAGCATTTGTATTGACGGGTCTTGCAAAGGGGGTATCTCAGGAGCAGCGGATGACAAAATTATAATGTACAGCTTGGATCATTCTTCGGGTACTTGTGTAGTTAAGAAAGAAATCAGTTTGGATCGACCAGGCATATCAGGCATCTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATATAATTACCGCAAGGGAAATGCTTTAGCTATTTTGAAGTATCACCATGGCACATGCAACGCTGTAACTTATTCCTCTGATTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1158 0.4275 MSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGEVRIWDTLQHRTLSSAWLHSAAHGIVAVACVSSLGTNKFASQGRDGTVKVWEFDDAGLSRIPSLTIKTNSYHFCKFSVMKNDSVGSTEGKELEDCNRREPGGMSDSEILEVKRDEAYTNKSCSTSFGENTYSGGLQCVALSGENSSEVEIWDLKSAEKIVQLPSSNPINSSSVSNRGMCMALQLFLSLESQGFLNVLAGYEDGSMLWWDIRNPKVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIIMYSLDHSSGTCVVKKEISLDRPGISGISIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1632 385 Gene3D - 300 384 IPR015943 GO:0005515
Vra5g1632 385 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Vra5g1632 385 Pfam WD domain, G-beta repeat 344 378 IPR001680 GO:0005515
Vra5g1632 385 Pfam WD domain, G-beta repeat 312 337 IPR001680 GO:0005515
Vra5g1632 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 347 385 - -
Vra5g1632 385 PANTHER TRANSDUCIN BETA-LIKE 3 3 384 - -
Vra5g1632 385 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Vra5g1632 385 PANTHER - 3 384 - -
Vra5g1632 385 SMART WD40_4 340 379 IPR001680 GO:0005515
Vra5g1632 385 SMART WD40_4 252 291 IPR001680 GO:0005515
Vra5g1632 385 SMART WD40_4 6 45 IPR001680 GO:0005515
Vra5g1632 385 SMART WD40_4 298 337 IPR001680 GO:0005515
Vra5g1632 385 SMART WD40_4 51 91 IPR001680 GO:0005515
Vra5g1632 385 Gene3D - 4 123 IPR015943 GO:0005515
Vra5g1632 385 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Vra5g1632 385 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Vra5g1632 385 PRINTS G protein beta WD-40 repeat signature 366 380 IPR020472 -
Vra5g1632 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Vra5g1632 385 Gene3D - 161 299 IPR015943 GO:0005515
Vra5g1632 385 SUPERFAMILY WD40 repeat-like 4 379 IPR036322 GO:0005515
Vra5g1632 385 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Vra5g1632 385 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 385 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1632 235 380 Miscellaneous Gene Families AT5G08390 23.973 3.78e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1632 K24770 - gmx:100800482 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1632 5 22745641 22754773 Vra5g1632 5 22745641 22754773 ECH