Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1626 ATGGGAGCTCTTGCTACATTAGCCCCTTGGATTCCCGAGGACGATCTTTTGCTCAAGAACGCCGTTGAGGCGGGTGCTTCACTAGAGTCACTTGCCAAAGGTGCAGTGCAATTTTCTCGAAAATATAGTATCAGAGAGATACAAGATAGGTGGTATTCTCTCCTCTATGATCCTGTCATTTCTGCAGAAGCTTCTGCGGGTATGACAAACTTTGAGCTTTCAGCTTCGCCTCTCCCATCGAAGTTTTACAGGTTTGGACATTCCAAGGAACAGAAAGTTGTTTCAGCTAAGAGAAAGTCTGGAAGTGTTCGCAATTTGTATTATGCAAGGTGCAAAAGAATTCGAAATAGCATGTTAACTTCCATGGACTTGAGTTTTCTAGTGGATCCAGGAAATGGTAATTATGCAGAGCATGAAAGTCACCCCTTATCTGGAACCTGCGTGCCTGAAGGTGGAACGTTAAATCTCGCTGTTCAGTATGATTTTCCTCCTGAAAATGTGATGGATGATAATGTGGTTTCTGATGGAGTTACTGCCAATGTGTTTTTCTCTGGAGTTGAAAGGGCAGTTGAAGAGAATTTTCCTGCCAAGCTAAATAATGTACTTAAGGAAGAACCTCATTTTATTGGAGACAACGTGCCTTTGGATGAAGCTGTTGAGGAATTGGATGTTCCTGGAGAATTGACTATTGATGGGTGGATTGGTGACGATAATTTAGAGAGAATACCTTTGCCCACCTTAGATGACATCAACAATGATCCTGGAAATATGTGTCCTGATTTTGATGAAAAAAGTGTATTTGATTCAACCGAGTTAGAGTGTGGAACTTCTTTTAACTTAGCTTCACTTCCTGAAATACCAGTCTGGAGTACAGATGAGGGCATCAAAGAGTCTGATATGCCATGCGATGGTTTTAATGATTCGATTGCTTGTGGAGGCGCTTATTTGGAAGAACTTTCCAATTCCCTCCTCAACTTTAGTAGTGAGGAAGAGCTCTTTCTGATGGATGTTGATGGAGAAGAAGGGATTGACAAATCTTACTTGGATGGTCTGAGTTCGCTCCTGCTAAATTCTACAAATGATGTTAATCCAAGTCAAGTCCCTAAAAAGGATGAAGCAGAGCTGCAAGTCCCTAAAACAGATGGAACAGAGTCCTTGATGGCCACACAAGCACATGTTCTAAATCATTCAGTTTCATGTTATAAAGAGTTAGAAGACAACCCAGGGTCAACCTCTAGTGGTGTACAAGTAGTTCACAAATTAGAGTTCCAAATGTCATCTCCTCCCTTGGCTGAAGATCCCCTCTTTCATGAACTAAATAACGAAGTTCCTTCCTGTTCCCTAAACACCGAGGAACAAGAAATTCCAGATAATGAAGACGTTTTCCTACCATTTGATGTGCCTCCTGTCATATTTCCCCCTTCATCTAAACTGATTTTTAAAGCATCCAAGAAACCGATTTCGTCATCTGTTCAGGATTATGGATTTAATAGGCATAGAGCTAATGAAAGAGGCAAATCTTTGATGCATGCAGAGAAGAAAATCCGTGTAGAATCTCAATCATCTTCTCAGATGATGGGATCTCCTTGCTTCCTGGTACCTGATGGTGGTTCTAAGGTAAAATGCGAGTTGCCTGCTAATCATACATCACACATAGTATCTACCAGTTCTGTTACTGTTTCTGGTGGCTTAGGTGGAAATGGTGTTGCAAACACTACAAATGCTCCTCTGCATGCAAATAAAAAGGAAGAAGCTACCAATGCTGACTTGGCAAAGGATCGATGCAATCATATGGCAAATCCTTTCATTAAGAAATCAGCAGGTAGTTCGATTGACTTACGAAATAATCCCCAATTTCATGGTTCTAGCATGAAGAATGAACAAGATTTAGGTTTGTCACTTCAAGATCACCAGTTGAAATGTGCTGAAGTTGGATCCTCAGATGTTCTTGACTCGGAGCTGGTGGCAGACCCCCTAACACTAGATGAGGAAGAGCATGATATAGACAGTGACGATGAGCTTCCATCTTATTCTGACGTAGAAGCAATGGTACTTGATATGGACTTGGATCCTGATGATCATCAGGATTCTTGTTATAGTGAGGAAGTATCAAGATATCAACATGTGGAAAGTAAGCGAGCTGTCATGAGGCTGGAACAGGGTGCCCATTCTTGTATTCAGAGAGCCATTAATGCACATGGAGCATTTGCCATCTTATATGGTCGCCACTCAAAGCATTATATTAAGAAACCCGAGGTTCTACTTGGTCGAGCGACGGAAGGTTTTCCTGTAGACATTGACTTGAGCAAAGGAGGGTATAGCAATTCAATATCTCGACGTCAGGCAATTATAAAGATGGATAAAGAGGGGTCATTCTACATAAAAAACTTCGGCAAGAGTTCAATCCTGGTAAATAGCAAAGAAGTGCACACTGGTCAGTCTCAAAGATTGCATACTAATTATCTAATTGAGGTGAGGGGCATACCTTTGATATTTGAGATAAATCAAAATCGTGTGAAGCGGTACCTGGATCACATTTCTGACAATTCACAAACCTTTTAG 2562 0.4122 MGALATLAPWIPEDDLLLKNAVEAGASLESLAKGAVQFSRKYSIREIQDRWYSLLYDPVISAEASAGMTNFELSASPLPSKFYRFGHSKEQKVVSAKRKSGSVRNLYYARCKRIRNSMLTSMDLSFLVDPGNGNYAEHESHPLSGTCVPEGGTLNLAVQYDFPPENVMDDNVVSDGVTANVFFSGVERAVEENFPAKLNNVLKEEPHFIGDNVPLDEAVEELDVPGELTIDGWIGDDNLERIPLPTLDDINNDPGNMCPDFDEKSVFDSTELECGTSFNLASLPEIPVWSTDEGIKESDMPCDGFNDSIACGGAYLEELSNSLLNFSSEEELFLMDVDGEEGIDKSYLDGLSSLLLNSTNDVNPSQVPKKDEAELQVPKTDGTESLMATQAHVLNHSVSCYKELEDNPGSTSSGVQVVHKLEFQMSSPPLAEDPLFHELNNEVPSCSLNTEEQEIPDNEDVFLPFDVPPVIFPPSSKLIFKASKKPISSSVQDYGFNRHRANERGKSLMHAEKKIRVESQSSSQMMGSPCFLVPDGGSKVKCELPANHTSHIVSTSSVTVSGGLGGNGVANTTNAPLHANKKEEATNADLAKDRCNHMANPFIKKSAGSSIDLRNNPQFHGSSMKNEQDLGLSLQDHQLKCAEVGSSDVLDSELVADPLTLDEEEHDIDSDDELPSYSDVEAMVLDMDLDPDDHQDSCYSEEVSRYQHVESKRAVMRLEQGAHSCIQRAINAHGAFAILYGRHSKHYIKKPEVLLGRATEGFPVDIDLSKGGYSNSISRRQAIIKMDKEGSFYIKNFGKSSILVNSKEVHTGQSQRLHTNYLIEVRGIPLIFEINQNRVKRYLDHISDNSQTF* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1626 853 ProSiteProfiles Forkhead-associated (FHA) domain profile. 753 809 IPR000253 GO:0005515
Vra5g1626 853 Gene3D - 695 845 - -
Vra5g1626 853 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Vra5g1626 853 PANTHER FHA DOMAIN PROTEIN 1 851 - -
Vra5g1626 853 SUPERFAMILY SMAD/FHA domain 728 835 IPR008984 GO:0005515
Vra5g1626 853 PANTHER MICROSPHERULE PROTEIN 1 1 851 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vra5g1626 853 CDD FHA 749 835 IPR000253 GO:0005515
Vra5g1626 853 SMART FHA_2 752 809 IPR000253 GO:0005515
Vra5g1626 853 Pfam FHA domain 754 824 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1626 Vra-Chr5 22686754 22692502 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1626 - - pvu:PHAVU_009G014000g 1462.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1626 5 22686754 22692502 Vra5g1626 5 22686754 22692502 ECH