Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1619 ATGGATGAAGAAAATGGTTACAGTGGGAGTAGCAGCTCGAATTTGGAGACTTCGAAGGCGGAGAGATCTGTGTGGTTGATGAAATGCCCTTTGGTGGTGGCTAAGTCATGGCAGACTCATCCTCCTTCTCAACCTCTCGCTAAGGTCGTCCTCTCCCTCGATCCTCTCCATCCCGAAGAAGATCCCTCTGCAGTTCAGTTTACAATGGAGATGGCTGGCTCTGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAGGACTTTGTTCCTATGTGTGTCTTCTCTGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGTAAATTGTGCCGTGAGAGGACAAACAGATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGATCGCGGAGTTCTAATGAGGCCAATGCCCGGAATGATTGGTCTAGTTTCATCCAATTCCAAGGACAAGAAAAAAACGCAGCCAATTAAACAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCCTGAAACAGCTTGTCCAAGAGACTGATCAACCCGCCCAATTCTTGAAAGAGATTCTGAACGAACTGTGTGTTTATAATAAAAGAGGTGCCAATCAAGGAACTTATGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACAAATGCTGAATGA 786 0.4275 MDEENGYSGSSSSNLETSKAERSVWLMKCPLVVAKSWQTHPPSQPLAKVVLSLDPLHPEEDPSAVQFTMEMAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNRSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPIKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTNAE* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1619 261 Pfam TFIIF, beta subunit HTH domain 189 252 IPR040450 -
Vra5g1619 261 MobiDBLite consensus disorder prediction 174 191 - -
Vra5g1619 261 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 6 259 IPR003196 GO:0005674|GO:0006366|GO:0006367
Vra5g1619 261 SUPERFAMILY Rap30/74 interaction domains 12 121 IPR011039 GO:0006367
Vra5g1619 261 MobiDBLite consensus disorder prediction 166 191 - -
Vra5g1619 261 SUPERFAMILY "Winged helix" DNA-binding domain 187 253 IPR036390 -
Vra5g1619 261 Gene3D - 187 254 IPR036388 -
Vra5g1619 261 CDD TFIIF_beta 14 120 - -
Vra5g1619 261 Pfam TFIIF, beta subunit N-terminus 21 137 IPR040504 -
Vra5g1619 261 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 6 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1619 Vra-Chr5 22632611 22638622 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1619 K03139 - gmx:100788473 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1619 5 22632611 22638622 Vra5g1619 5 22632611 22638622 ECH