Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1616 ATGGACCTTGATCCTCGTCAATATGAAAACGTTGCTATAAATGATAATGACATCCACAGTATTGTTCTGTCATATCTTATACATAATTGTTACAAAGAATCGGTAGAATCATTCATTACTAGCACTGGGACCAAGCAGCCTGCAGATTATTTGGAGGACATGGACAAAAGGAAAAAAATCTTTCACTTTGCACTCGAGGGAAATGCACTCAAGGCCATTGAGCTTACTGAGCAGCTAGCACAGGATATTTTAGAGAAGAATAAGGATTTGCAGTTTGATCTACTAAGCCTTCATTTTGTTGAGCTTGTTTGCTCCAGGAAATGCACAGAAGCTTTGGAATTTGCTCAGACCAAGCTGGGCCCTTTTGGAAAGGAGCCCAAATATATGGAAAAACTTGAAGATTTTATGGCCCTTCTTGCCTATAAGGAGCCAGAGAAATCCCCAATGTTTCATCTCCTTAGCTTAGAGTATCGGCAGCAGGTTGCAGATAGTTTGAATCGGGCTATTCTTGCACACTTGAATCTTCCCAGATACACGGCAATGGAGAGGCTAATACAGCAGGCTACAGTTGTTAGACAATGCTTAAATCAAGAAGCGGGAAAGGATGGGCCTCCACCATTTTCCTTAAAGGATTTTCTCAAAAGTTGA 648 0.4105 MDLDPRQYENVAINDNDIHSIVLSYLIHNCYKESVESFITSTGTKQPADYLEDMDKRKKIFHFALEGNALKAIELTEQLAQDILEKNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPRYTAMERLIQQATVVRQCLNQEAGKDGPPPFSLKDFLKS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1616 215 PANTHER RAN BINDING PROTEIN 9-RELATED 8 214 - -
Vra5g1616 215 SMART toby_final6 106 201 IPR013144 -
Vra5g1616 215 SMART Lish 14 46 IPR006594 GO:0005515
Vra5g1616 215 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Vra5g1616 215 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 53 110 IPR006595 -
Vra5g1616 215 SMART ctlh 53 110 IPR006595 -
Vra5g1616 215 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 30 8 214 - -
Vra5g1616 215 Pfam CTLH/CRA C-terminal to LisH motif domain 54 191 IPR024964 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1616 K23338 - gmx:100800484 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1616 5 22581613 22584843 Vra5g1616 5 22581613 22584843 ECH