Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1615 ATGAAATTGTTGTTGTCTCTCATCCTCCTCTTCACACTGTTCTTGCCTTTCGCCCCTGCCTCCGACACCTCCGATCTGTTCGAAAGGTGGTGCAAGGAACACGCCAAAACCTATTCTTCCGAGGAAGAGAAACGCTACAGGTTCCGCGTCTTCGAGGACAACTATGCCTTTGTCTCCCAACACAACCAGAACGCCAATGCTAACAATTCCACCTACACCCTCTCCCTCAACGCTTTCGCCGATCTCACCCACCATGAATTTAAAACCTCACGCCTTGGATTTTCCCCTTCCTTGCATCGATTCAAGCGGGTTCAGAATCAACAACCCCGTCACCTTCTACACCTTCCTTCTGAGATCGATTGGAGACAGAGTGGCGCCGTTACACCCGTCAAAGACCAATCAACCTGCGGTGCATGTTGGTCGTTCTCAGCTACTGGTGCAATTGAAGGTATAAATAAGATTGTTACTGGGTCTCTTGAAAGCATTTCTGAACAAGAATTGGTAGATTGTGATACATCCTACAACAGTGGTTGTGAAGGTGGACTAATGGATTATGCATACCAATTTGTCATTGACAACAAAGGGATCGATACAGAGGATGATTATCCATATCAAGCTCGGCAACGGTCTTGCAATAAGGACAAGTTAAAAAGGCGTATTGTTACAATTGATGATTATGCTGATTTGCCTCCGAACGAAGAAGAGCTACTAAAGGCCGTTGCTTCACAGCCTGTAAGTGTAGGCATATGTGGTAGTGAAAGAGCTTTCCAGTTGTACTCACAGGGTATTTTCTCCGGACCATGCTCAACTGCTTTGGATCATGCAGTATTGATAGTAGGATATGGTTCAGAAAATGGAGTTGATTATTGGATTGTAAAGAACTCATGGGGAAGATATTGGGGAATGGATGGTTACATACACATGATACGGAACAGTGGCGATTCCAAAGGGATATGTGGAATCAACACGTTAGCTTCATATCCTATCAAGACCACGCCTAATCCTCCTCCTCCCCCAGCTCCTGTAAGATGTAATCTGTTCACTCACTGTTCAGAAGGAGAAACATGTTGTTGTGCCAAGAGCTTTCTTGGAATATGTTTTTCTTGGAAATGCTGTGGGTTAACTACTGCTGTGTGTTGTAAAGACAGGCGGCATTGTTGCCCCCTTGATTATCCAATTTGTGATACAAAAAAGAGCCAATGTTTAAAGATTACAAACGGGACCACAACAATCACAACCGGAAATCAAGATTTCTCCAACAAGCCAAGAGGTTGGAAATCTCATTGA 1287 0.4437 MKLLLSLILLFTLFLPFAPASDTSDLFERWCKEHAKTYSSEEEKRYRFRVFEDNYAFVSQHNQNANANNSTYTLSLNAFADLTHHEFKTSRLGFSPSLHRFKRVQNQQPRHLLHLPSEIDWRQSGAVTPVKDQSTCGACWSFSATGAIEGINKIVTGSLESISEQELVDCDTSYNSGCEGGLMDYAYQFVIDNKGIDTEDDYPYQARQRSCNKDKLKRRIVTIDDYADLPPNEEELLKAVASQPVSVGICGSERAFQLYSQGIFSGPCSTALDHAVLIVGYGSENGVDYWIVKNSWGRYWGMDGYIHMIRNSGDSKGICGINTLASYPIKTTPNPPPPPAPVRCNLFTHCSEGETCCCAKSFLGICFSWKCCGLTTAVCCKDRRHCCPLDYPICDTKKSQCLKITNGTTTITTGNQDFSNKPRGWKSH* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1615 428 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 362 - -
Vra5g1615 428 Gene3D Cysteine proteinases 17 331 - -
Vra5g1615 428 Pfam Granulin 355 402 IPR000118 -
Vra5g1615 428 PANTHER OS05G0508300 PROTEIN 15 362 - -
Vra5g1615 428 Pfam Cathepsin propeptide inhibitor domain (I29) 27 87 IPR013201 -
Vra5g1615 428 SUPERFAMILY Cysteine proteinases 23 329 IPR038765 -
Vra5g1615 428 Gene3D Granulin 340 404 IPR037277 -
Vra5g1615 428 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Vra5g1615 428 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Vra5g1615 428 PRINTS Papain cysteine protease (C1) family signature 289 295 IPR000668 GO:0006508|GO:0008234
Vra5g1615 428 CDD Peptidase_C1A 116 328 IPR039417 -
Vra5g1615 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
Vra5g1615 428 Pfam Papain family cysteine protease 115 329 IPR000668 GO:0006508|GO:0008234
Vra5g1615 428 SUPERFAMILY Granulin repeat 341 374 - -
Vra5g1615 428 SMART pept_c1 115 329 IPR000668 GO:0006508|GO:0008234
Vra5g1615 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 289 308 IPR025661 -
Vra5g1615 428 SMART Inhibitor_I29_2 27 87 IPR013201 -
Vra5g1615 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 133 144 IPR000169 -
Vra5g1615 428 SMART GRAN_2 344 401 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1615 Vra-Chr5 22574318 22578254 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1615 - - gmx:100805596 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1615 5 22574318 22578254 Vra5g1615 5 22574318 22578254 ECH