Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1611 ATGGCCGTCAACAACAACAACAAGCTTCTTCTGATAACATTCGCCATATGCCGTCTGATAGTAACGGTGGGATTAACGGTGCTCCCGGAGCTGCTCGATGTGGGACTCGAGGGTCGACTGAGCGTGGATACGTGGGAGCTGGAAGCGGCTTCGGTGGACTTCGGGAGGCTGAGCAGAGGGGTGCCTTCAGAGGTGGTGCACCCTGCGACGGCGGAGGATGTGGCGAGGGTGGTGAAGGCGGCGTTCGAGTCGGCGTTGGCGGTGTCGGCGAGGGGACATGGACATTCGATAAACGGGCAAGCGCTGATAAGAGAGAAGAAAGGGGTGGTGATTGAAATGGGAAAGGGTGGTAGCGGTGTTAGAGTGTGTGAGAAAGGAATGTATGTGGACGTGTGGGGTGGAGAGTTGTGGATAGAGGTTTTGAGTGCAACATTGGAGTATGGGCTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTATCCAACGCAGGAATTAGTGGACAAACCTTCAATCACGGTCCTCAAATCACCAATGTTTATGAGCTCGATGTCGTCACAGGAAAGGGTGAGCTGGTGACATGTTCAGAAGATCGTAACTCGGAGTTGTTCCATGCTGTTCTTGGCGGTCTTGGACAATTTGGAATCATCACAAGGGCTCGAATTGCTCTCGAACCAGCTCCTCGCAGAGTTCGGTGGATTAGAGTTTTGTATTCGAATTTTGGAAGGTTTTGTGAGGATCAGGAGTATCTGATTTCTCTGCATGGGAAACCAGGGAGGGAGAGATTCGATTATGTGGAGGGTTTCGTGATAGTTGATGAAGGGCTGATAAATAATTGGAGATCTTCGTTTTTTTCACCAAGTAACCCTGTTAATATCACTTCCCTCAACGCCGATGGAGGTGTTTTGTACTGCTTGGAGATTACAAAAAACTACGACCAAGAAAACGCAGATTCTGTTGACGAGGAAATACAGGGTCTATTGAAAAAGTTGCATTTTATATCAACATCTGTGTTCACATCAGACTTGCCTTACGTAGATTTTCTGGATCGTGTACATAAGGCAGAGTTGAAGCTTAGATCCAAGGGTTTATGGGATGTTCCTCATCCATGGCTCAATCTTTTTGTTCCTAAATCAAGGATAAAGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTCGGAAATAAGACAAGTGGACCTATCCTCATCTACCCTATGAACAAAAGCAAGTGGGACCCTAGGAGCTCGGTGGTGACACCAGAAGAAGATGTGTTTTACCTGGTGGCATTTCTGAGATCAGCATTGGATACTGAGACACTGGAGTACCTGACTAATCAGAATCGTCAGATTCTGAGATTCTGCCATGGTTCGGAGATCAAGGTGAAACAGTACCTGCCCCATTACACTACGCAGCAGGAGTGGATGGACCACTTTGGCGATAAGTGGACCCAATTCAATGCCAGGAAGATGCAATTCGATCCTCGCAGAATCTTAGCCACAGGGCAGCAAATTTTTCAATTTCATCCATCCAAGGAGGATGATATGTAA 1563 0.4786 MAVNNNNKLLLITFAICRLIVTVGLTVLPELLDVGLEGRLSVDTWELEAASVDFGRLSRGVPSEVVHPATAEDVARVVKAAFESALAVSARGHGHSINGQALIREKKGVVIEMGKGGSGVRVCEKGMYVDVWGGELWIEVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQITNVYELDVVTGKGELVTCSEDRNSELFHAVLGGLGQFGIITRARIALEPAPRRVRWIRVLYSNFGRFCEDQEYLISLHGKPGRERFDYVEGFVIVDEGLINNWRSSFFSPSNPVNITSLNADGGVLYCLEITKNYDQENADSVDEEIQGLLKKLHFISTSVFTSDLPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIKDFDKGVFKGILGNKTSGPILIYPMNKSKWDPRSSVVTPEEDVFYLVAFLRSALDTETLEYLTNQNRQILRFCHGSEIKVKQYLPHYTTQQEWMDHFGDKWTQFNARKMQFDPRRILATGQQIFQFHPSKEDDM* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1611 520 Gene3D - 50 511 IPR016167 -
Vra5g1611 520 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 62 95 IPR006093 GO:0016491
Vra5g1611 520 PANTHER CYTOKININ OXIDASE 5-RELATED 10 511 - -
Vra5g1611 520 Gene3D - 236 469 IPR016170 -
Vra5g1611 520 Pfam FAD binding domain 62 201 IPR006094 GO:0050660
Vra5g1611 520 SUPERFAMILY FAD-linked oxidases, C-terminal domain 233 510 IPR016164 GO:0003824|GO:0050660
Vra5g1611 520 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 233 510 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vra5g1611 520 SUPERFAMILY FAD-binding/transporter-associated domain-like 37 231 IPR036318 GO:0050660
Vra5g1611 520 PANTHER GULONOLACTONE OXIDASE 10 511 - -
Vra5g1611 520 ProSiteProfiles PCMH-type FAD-binding domain profile. 58 232 IPR016166 GO:0071949
Vra5g1611 520 Gene3D - 113 234 IPR016169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1611 Vra-Chr5 22538793 22545362 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1611 K00279 - gmx:100790584 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1611 5 22538793 22545362 Vra5g1611 5 22538793 22545362 ECH