Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1610 ATGTTGATTCGACGATTACCTTGGTCAGCGATTTCTGTCGCCACACTATTGCCATGTCGTTCCGGTGGTTCAAATGGACTTCGCATTCCCGTTCGCAAGCAACTTAACTCTTCTCCTTACCCCTTCTGCTATAGCTCCGGCATCAATCTCCCTCCACAACCGGGTCACGAAACGGATATTCGTCACTCGCAATCTCTAAAACCCGGTCTTTACCTTGTTGGAACACCGATCGGAAATCTCGAAGATATCACTCTGAGGGCTCTTCGCGTGCTGAATTCAGCTGATGTTATACTCTCGGAGGACACGAGACATTCGGGGAAGTTGCTTCATCACTATAACATCAAAACGCCTCTCATGAGTTATCACAAATACAACGAATCGCAAAGGGAACAGGTTGTGCTGAGGAGGCTGAAGCAGGGTGATATTGTGGCTCTTATAAGTGATGCTGGAATGCCAGGCATCAGTGATCCGGGTATGGAGTTGGCAAAATTGTGTGTTAGTGAGAATATCCTGGTTGTGCCAATCCCTGGTCCTTGTGCTTTGGTGTCGGCTCTTTCTGCCTCGGGCTTACCTACTGATGAATTCACATTCGTTGGTTTTCTTCCTAAACATTCTGGTTCTAGAAAAAAAAGGCTTATGGTTTCAGCTGATCAAACTACTACACAGATATTTTACGTTCCTCCTCACAAGCTTTCTCAGTTTCTTGATGAGAGTTCTTCAATTTTTGGTGATGCAAGGAAATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAAGAGTTTTGGCGTGGTACACTTGGTGAAGCCAAGGAAGTATTTTCTATTCGTCAAGTGAAGGGAGAACTCACTATATTGATTCAGGGGCAAGCAAATTCTAAAGTTGAACCTCCATCAGACATCGAGCTTGAGAGTGAACTTAGAGAACTGATTTCAAGTGGCGAGAGTCTTTCCATGGCTGTCAAGTTGGTCACCGGCAAAACATCAGTGAGTAGGAAAACTATATATTCACTGGCATTAAGGAAGTTTGGGAAGCAACTCGAAGTGGAAGATGATTCAAATTAG 1062 0.4435 MLIRRLPWSAISVATLLPCRSGGSNGLRIPVRKQLNSSPYPFCYSSGINLPPQPGHETDIRHSQSLKPGLYLVGTPIGNLEDITLRALRVLNSADVILSEDTRHSGKLLHHYNIKTPLMSYHKYNESQREQVVLRRLKQGDIVALISDAGMPGISDPGMELAKLCVSENILVVPIPGPCALVSALSASGLPTDEFTFVGFLPKHSGSRKKRLMVSADQTTTQIFYVPPHKLSQFLDESSSIFGDARKCVIAREMTKLHEEFWRGTLGEAKEVFSIRQVKGELTILIQGQANSKVEPPSDIELESELRELISSGESLSMAVKLVTGKTSVSRKTIYSLALRKFGKQLEVEDDSN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1610 353 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 147 158 IPR018063 GO:0008168
Vra5g1610 353 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 70 339 IPR008189 GO:0008168
Vra5g1610 353 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 70 269 IPR000878 GO:0008168
Vra5g1610 353 Gene3D - 55 176 IPR014777 GO:0008168
Vra5g1610 353 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 350 - -
Vra5g1610 353 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 69 288 IPR008189 GO:0008168
Vra5g1610 353 Gene3D - 177 294 IPR014776 GO:0008168
Vra5g1610 353 SUPERFAMILY Tetrapyrrole methylase 68 286 IPR035996 GO:0008168
Vra5g1610 353 CDD RsmI 71 287 IPR008189 GO:0008168
Vra5g1610 353 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 55 350 IPR008189 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1610 K07056 - gmx:100819709 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1610 5 22533104 22537723 Vra5g1610 5 22533104 22537723 ECH